Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   I6G22_RS07600 Genome accession   NZ_CP065737
Coordinates   1428128..1428793 (-) Length   221 a.a.
NCBI ID   WP_025016836.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1423128..1433793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS07580 (I6G22_07585) - 1423619..1424749 (+) 1131 WP_014570781.1 aminotransferase -
  I6G22_RS07585 (I6G22_07590) - 1424941..1426434 (+) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  I6G22_RS07590 (I6G22_07595) - 1426513..1427004 (+) 492 WP_023188625.1 prolyl-tRNA synthetase associated domain-containing protein -
  I6G22_RS07595 (I6G22_07600) dinB 1427083..1428177 (+) 1095 WP_023188626.1 DNA polymerase IV -
  I6G22_RS07600 (I6G22_07605) cclA/cilC 1428128..1428793 (-) 666 WP_025016836.1 prepilin peptidase Machinery gene
  I6G22_RS07605 (I6G22_07610) - 1428960..1429406 (+) 447 WP_004254538.1 Dps family protein -
  I6G22_RS07610 (I6G22_07615) - 1429489..1429875 (-) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  I6G22_RS07615 (I6G22_07620) - 1429878..1430849 (-) 972 WP_017865099.1 ROK family glucokinase -
  I6G22_RS07620 (I6G22_07625) - 1430882..1431103 (-) 222 WP_010906270.1 YqgQ family protein -
  I6G22_RS07625 (I6G22_07630) - 1431295..1432023 (+) 729 WP_023188628.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  I6G22_RS07630 (I6G22_07635) - 1432323..1432649 (+) 327 WP_025016835.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25651.78 Da        Isoelectric Point: 8.3252

>NTDB_id=451040 I6G22_RS07600 WP_025016836.1 1428128..1428793(-) (cclA/cilC) [Lactococcus lactis strain FDAARGOS_865]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSEIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRVEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=451040 I6G22_RS07600 WP_025016836.1 1428128..1428793(-) (cclA/cilC) [Lactococcus lactis strain FDAARGOS_865]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTGAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGTTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGGCACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

37.443

99.095

0.371
  cclA/cilC Streptococcus pneumoniae Rx1

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae D39

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae R6

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

37.209

97.285

0.362