Detailed information NTG0450932

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HQ912_RS24495
• Genome accession: NZ_CP054128
• Coordinates: 5500983..5502329 (+)
• Length: 448 a.a.
• NCBI ID: WP_076386371.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MPDS
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5495983..5507329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ912_RS24470 (HQ912_24470)	pgeF	5496195..5496920 (-)	726	WP_076386367.1	peptidoglycan editing factor PgeF	-
HQ912_RS24475 (HQ912_24475)	rluD	5496917..5497879 (-)	963	WP_047229873.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HQ912_RS24480 (HQ912_24480)	-	5498031..5499047 (+)	1017	WP_047229874.1	outer membrane protein assembly factor BamD	-
HQ912_RS24485 (HQ912_24485)	-	5499171..5499404 (+)	234	WP_047229875.1	PP0621 family protein	-
HQ912_RS24490 (HQ912_24490)	pilS	5499394..5500986 (+)	1593	WP_173407393.1	nitrogen regulation protein NR(II)	Regulator
HQ912_RS24495 (HQ912_24495)	pilR	5500983..5502329 (+)	1347	WP_076386371.1	sigma-54-dependent transcriptional regulator	Regulator
HQ912_RS24500 (HQ912_24500)	-	5502380..5502745 (-)	366	WP_173407394.1	DUF6124 family protein	-
HQ912_RS24505 (HQ912_24505)	thiO	5503993..5505093 (-)	1101	WP_047230179.1	glycine oxidase ThiO	-
HQ912_RS24510 (HQ912_24510)	-	5505149..5505550 (-)	402	WP_076386375.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50223.65 Da
• Isoelectric Point: 6.3576

>NTDB_id=450932 HQ912_RS24495 WP_076386371.1 5500983..5502329(+) (pilR) [Pseudomonas sp. MPDS]
MTTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAENLAQARALLAEDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSVAIPAASIERCLLGDSPPMHNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSAQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVTAGRFRQDLYYRLNVIELRVPPLRERREDIESLA
NHTLQRLAANTGSPAVKLHPQALDALRNYRFPGNVRELENMLERAYTLCEHQLIEAHDLRLAEGISTTDAGSPDLMRVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=450932 HQ912_RS24495 WP_076386371.1 5500983..5502329(+) (pilR) [Pseudomonas sp. MPDS]
TTGACTACGCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTAGG
CCGGATGAAACTCGACACCCGCAGCGCCGAGAACCTTGCCCAGGCCCGGGCCCTGCTGGCTGAAGACACCTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACTGGCCTGGAGCTGGTGCAACATATCCAGCAACGCTACCCGCAATTGCCC
GTGGCAATGATCACCGCCTACGGGAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGTGAGCTGGTAACCAGCGCATTACGCCTGCCGTCGGTCGCCATCCCGGCGGCGTCCA
TCGAGCGCTGTCTGCTGGGCGATTCCCCGCCGATGCACAACGTCCGCAAACAGATCGAAAAACTCGCTCGCAGTCAGGCG
CCGGTCTACATCAGCGGGGAATCGGGTTGCGGCAAGGAACTGGTCGCCCGGTTGATCCATGAGCAAGGCCCGCGTTCCGC
CCAGCGTTTTGTGCCGGTCAACTGTGGGGCGATTCCCACTGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGACTGTTCCAGGCCGCCCACGGCGGGACCTTGTTCCTTGACGAAGTGGCC
GACCTGCCCCTGGCGATGCAAGTCAAATTGCTGCGGGCCATCCAGGAAAAAGCCGTGCGGGCCGTTGGTGGCCAGCAGGA
AGAAGTGGTGGATGTACGAATTCTTTGCGCCACCCACAAGGACCTGGACGCCGAAGTCACCGCCGGGCGCTTTCGCCAGG
ACCTGTACTATCGACTCAACGTCATCGAACTGCGCGTCCCGCCGCTGCGCGAACGCCGCGAAGACATCGAATCGCTCGCC
AATCACACCCTCCAGCGCCTGGCCGCCAACACCGGCAGCCCCGCAGTCAAGCTCCATCCCCAAGCCCTGGACGCCCTTCG
AAACTACCGCTTTCCGGGCAATGTTCGGGAACTGGAAAACATGCTCGAACGCGCCTACACCCTTTGCGAGCACCAGTTGA
TCGAAGCCCACGACCTGCGCCTGGCCGAGGGCATCAGCACCACCGACGCAGGCAGCCCCGACCTGATGCGGGTCGATAAC
CTGGAAGACTATCTGGAGGACGTCGAACGCAAACTCATCCTCCAGGCTTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.604	99.107	0.779
pilR	Acinetobacter baumannii strain A118	49.891	100	0.511