Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HQ912_RS24490 Genome accession   NZ_CP054128
Coordinates   5499394..5500986 (+) Length   530 a.a.
NCBI ID   WP_173407393.1    Uniprot ID   -
Organism   Pseudomonas sp. MPDS     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5494394..5505986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ912_RS24470 (HQ912_24470) pgeF 5496195..5496920 (-) 726 WP_076386367.1 peptidoglycan editing factor PgeF -
  HQ912_RS24475 (HQ912_24475) rluD 5496917..5497879 (-) 963 WP_047229873.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HQ912_RS24480 (HQ912_24480) - 5498031..5499047 (+) 1017 WP_047229874.1 outer membrane protein assembly factor BamD -
  HQ912_RS24485 (HQ912_24485) - 5499171..5499404 (+) 234 WP_047229875.1 PP0621 family protein -
  HQ912_RS24490 (HQ912_24490) pilS 5499394..5500986 (+) 1593 WP_173407393.1 nitrogen regulation protein NR(II) Regulator
  HQ912_RS24495 (HQ912_24495) pilR 5500983..5502329 (+) 1347 WP_076386371.1 sigma-54-dependent transcriptional regulator Regulator
  HQ912_RS24500 (HQ912_24500) - 5502380..5502745 (-) 366 WP_173407394.1 DUF6124 family protein -
  HQ912_RS24505 (HQ912_24505) thiO 5503993..5505093 (-) 1101 WP_047230179.1 glycine oxidase ThiO -
  HQ912_RS24510 (HQ912_24510) - 5505149..5505550 (-) 402 WP_076386375.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58774.57 Da        Isoelectric Point: 7.2516

>NTDB_id=450931 HQ912_RS24490 WP_173407393.1 5499394..5500986(+) (pilS) [Pseudomonas sp. MPDS]
MTAEQASSPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARL
FGLALTDVLLLSWLFYAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLDLSDSSRPSSYLQAGTL
GALCFAAALLVQGLTRRLEASEILAEQRASEVVGLEALNALILQRMRTGILVLDGQRRVQLANESALSLLGMHDLVGQRL
DDCSGALVERLQLWLNNPSLRPQSLTINGTGLTLQPSFIALGHHDQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLRESEELNSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRIWLDQFVRQARENAAE
HQHLHLSIDPGDYLTLMDPDQLTQVLDNLLRNAWRHSAMAHEEAEVWLKLFIAPHSQLSTLDIIDNGPGVTPDQQAHLFE
PFFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=450931 HQ912_RS24490 WP_173407393.1 5499394..5500986(+) (pilS) [Pseudomonas sp. MPDS]
GTGACCGCTGAGCAAGCCTCAAGCCCTCGCGTCAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGTCTAAG
CATCGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGATTTGCTGC
GCAGCGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTTCTTGAAAATACCCGCCGCCCGGCCCGGCTG
TTCGGCCTGGCTCTGACCGACGTGCTGTTGTTGTCGTGGCTGTTCTACGCTGCCGGCGGTGCCCCCAGCGCCATCGGCAA
CCTGCTCATCGTCTCGGTGGCCATCGGCAATACGCTGTTGCGAGGCCGAATCGGCCTGTTGATTGCCGCTGTCGCCACGC
TGGGCATCGTCGGATCGAGCTTCTTCCTAGACCTCAGCGACTCGAGCCGTCCCAGCAGTTATCTGCAGGCCGGCACCCTG
GGGGCCTTGTGTTTTGCCGCCGCGCTGCTGGTACAAGGCCTGACCCGACGCCTGGAAGCCAGTGAAATCCTCGCCGAACA
ACGGGCCAGCGAAGTGGTCGGCCTGGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCG
ATGGCCAGCGCCGGGTGCAATTGGCTAACGAAAGCGCATTGAGTCTGTTAGGCATGCACGATCTGGTCGGCCAGCGGCTC
GACGACTGCTCCGGCGCCCTGGTGGAGCGGCTGCAGCTGTGGTTGAACAACCCCAGCCTGCGTCCGCAAAGCCTGACCAT
TAACGGCACCGGCCTGACCTTGCAACCGAGTTTCATTGCCCTGGGGCATCACGATCAGCATCAGATCCTGGTCTTCCTCG
AAGACCTGGCCCAAGTGGCCCAGCACGCCCAGCAGTTGAAACTCGCCTCCCTGGGGCGCCTCACCGCCGGTATCGCCCAT
GAAATCCGCAACCCGTTGGGGGCGATCAGCCATGCGGCTCAATTGCTGCGCGAGTCCGAGGAACTGAACAGCGCGGATCG
GCGTCTGACGCAGATCATCCAGGATCACTCCCAACGAATGAACCGCGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCC
AGCAGACCACGCCGCAGCGCCTGGATCTGCGGATCTGGCTCGACCAGTTCGTCCGACAAGCCCGGGAAAACGCGGCTGAG
CATCAGCACTTGCACCTGAGCATCGACCCGGGTGACTACCTCACGCTGATGGACCCCGATCAGTTGACCCAGGTGCTCGA
CAACCTGCTGCGCAACGCCTGGCGTCATAGCGCGATGGCCCATGAAGAGGCCGAGGTCTGGCTGAAGCTGTTCATCGCCC
CCCACAGCCAGCTGTCCACGCTGGACATTATCGACAACGGCCCCGGCGTGACACCGGACCAGCAAGCGCATTTGTTCGAA
CCTTTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCG
CCTAGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(310-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.425

97.736

0.591