Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6G42_RS01180 Genome accession   NZ_CP065707
Coordinates   236079..236672 (-) Length   197 a.a.
NCBI ID   WP_038804655.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231079..241672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS01155 (I6G42_01155) - 232244..233188 (+) 945 WP_038804651.1 magnesium transporter CorA family protein -
  I6G42_RS01160 (I6G42_01160) - 233200..233877 (+) 678 WP_038804652.1 DUF1129 domain-containing protein -
  I6G42_RS01165 (I6G42_01165) - 234020..235054 (+) 1035 WP_038804653.1 S66 family peptidase -
  I6G42_RS01170 (I6G42_01170) - 235160..235423 (+) 264 WP_000166112.1 SemiSWEET family transporter -
  I6G42_RS01175 (I6G42_01175) - 235506..236069 (-) 564 WP_038804654.1 DNA-3-methyladenine glycosylase I -
  I6G42_RS01180 (I6G42_01180) ruvA 236079..236672 (-) 594 WP_038804655.1 Holliday junction branch migration protein RuvA Machinery gene
  I6G42_RS01185 (I6G42_01185) - 236832..237329 (+) 498 WP_038804804.1 helix-turn-helix domain-containing protein -
  I6G42_RS01190 (I6G42_01190) hexB 237481..239430 (-) 1950 WP_038804656.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6G42_RS01195 (I6G42_01195) - 239639..240079 (+) 441 WP_038804658.1 LytTR family DNA-binding domain-containing protein -
  I6G42_RS01200 (I6G42_01200) - 240076..240534 (+) 459 WP_038804659.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21799.34 Da        Isoelectric Point: 7.1974

>NTDB_id=450787 I6G42_RS01180 WP_038804655.1 236079..236672(-) (ruvA) [Streptococcus oralis strain FDAARGOS_885]
MYEYLKGIITKITAKYIVLEVNGIGYILRVANPYAYSGRVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=450787 I6G42_RS01180 WP_038804655.1 236079..236672(-) (ruvA) [Streptococcus oralis strain FDAARGOS_885]
ATGTACGAATATTTAAAAGGAATCATTACTAAAATCACTGCTAAATATATTGTCTTAGAGGTCAATGGTATCGGTTATAT
CTTGCGTGTAGCCAATCCCTATGCTTACTCAGGTCGGGTTAATCAAGAGACTCAAATTTATGTGCATCAAGTTGTTCGTG
AGGACGCACATCTGCTCTATGGTTTTCGCTCAGAAGATGAGAAGAAGCTCTTTCTTAGTCTGATCTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATCATCGCAGCCGATGATAATGCTGGCTTGGTTCAGGCGATTGAGACTAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGTAAGAAAACAGCCCAACAGATGGTGCTAGACTTGGAAGGCAAGGTAGTCGTGG
CTAGTGATGACCTTCCTGCCAAGGTGGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
TTGGCATTGGGCTACAAGGCGACCGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCCGAGAACTA
TATCAAGTCAGCTCTTAAGATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

96.447

100

0.964
  ruvA Streptococcus pneumoniae R6

95.939

100

0.959
  ruvA Streptococcus pneumoniae D39

95.939

100

0.959
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.262

100

0.431