Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CDCF5_RS03735 Genome accession   NC_017173
Coordinates   777477..778184 (+) Length   235 a.a.
NCBI ID   WP_021387635.1    Uniprot ID   A0A9P4DAE0
Organism   Clostridioides difficile CF5     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 772477..783184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDCF5_RS03705 cdd1 773237..773482 (+) 246 WP_009888450.1 protein Cdd1 -
  CDCF5_RS03710 - 773700..773969 (-) 270 WP_003426848.1 DUF3795 domain-containing protein -
  CDCF5_RS03715 - 774101..774403 (-) 303 WP_003426849.1 hypothetical protein -
  CDCF5_RS03720 - 774882..775619 (-) 738 WP_003426850.1 ABC transporter permease -
  CDCF5_RS03725 - 775631..776338 (-) 708 WP_021387633.1 ABC transporter permease -
  CDCF5_RS03730 - 776392..777315 (-) 924 WP_003426859.1 ABC transporter ATP-binding protein -
  CDCF5_RS03735 scnR 777477..778184 (+) 708 WP_021387635.1 response regulator transcription factor Regulator
  CDCF5_RS03740 - 778229..779635 (+) 1407 WP_021387636.1 sensor histidine kinase -
  CDCF5_RS03745 - 781034..781423 (+) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  CDCF5_RS03750 - 782239..782709 (+) 471 WP_021374621.1 VOC family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26689.14 Da        Isoelectric Point: 6.1467

>NTDB_id=45066 CDCF5_RS03735 WP_021387635.1 777477..778184(+) (scnR) [Clostridioides difficile CF5]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFKNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTSDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPRHLLTVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=45066 CDCF5_RS03735 WP_021387635.1 777477..778184(+) (scnR) [Clostridioides difficile CF5]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTAAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAAAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTCTCTATTATGAGAAAAATTAGAGAGACATCTAAGATACCA
GTTATTTTTCTCTCTGCAAGAGGAGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGATGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGACTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCATTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAGTGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAGACATCTTCTTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.351

98.298

0.485
  micA Streptococcus pneumoniae Cp1015

40.426

100

0.404
  vicR Streptococcus mutans UA159

38.793

98.723

0.383

Multiple sequence alignment