Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6H01_RS06975 Genome accession   NZ_CP065613
Coordinates   1418939..1419676 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_944     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413939..1424676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H01_RS06960 (I6H01_06960) clpC 1414393..1416966 (-) 2574 WP_038341531.1 ATP-dependent chaperone ClpB Regulator
  I6H01_RS06965 (I6H01_06965) yfiH 1417096..1417827 (-) 732 WP_038341532.1 purine nucleoside phosphorylase YfiH -
  I6H01_RS06970 (I6H01_06970) rluD 1417824..1418804 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6H01_RS06975 (I6H01_06975) comL 1418939..1419676 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6H01_RS06980 (I6H01_06980) raiA 1419952..1420293 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6H01_RS06985 (I6H01_06985) pheL 1420397..1420444 (+) 48 WP_010723158.1 phe operon leader peptide -
  I6H01_RS06990 (I6H01_06990) pheA 1420543..1421703 (+) 1161 WP_038341537.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6H01_RS06995 (I6H01_06995) tyrA 1421746..1422867 (-) 1122 WP_038341538.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6H01_RS07000 (I6H01_07000) aroF 1422878..1423948 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  I6H01_RS26495 - 1424158..1424325 (+) 168 Protein_1378 hypothetical protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=450218 I6H01_RS06975 WP_000197686.1 1418939..1419676(+) (comL) [Escherichia coli strain FDAARGOS_944]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=450218 I6H01_RS06975 WP_000197686.1 1418939..1419676(+) (comL) [Escherichia coli strain FDAARGOS_944]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCGTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376