Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC62_RS05915 Genome accession   NZ_CP054017
Coordinates   1156737..1157114 (-) Length   125 a.a.
NCBI ID   WP_002451647.1    Uniprot ID   -
Organism   Staphylococcus warneri strain FDAARGOS_754     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1151737..1162114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC62_RS05890 (FOC62_05900) thiE 1152320..1152961 (-) 642 WP_002451642.1 thiamine phosphate synthase -
  FOC62_RS05895 (FOC62_05905) thiM 1152962..1153753 (-) 792 WP_002451643.1 hydroxyethylthiazole kinase -
  FOC62_RS05900 (FOC62_05910) thiD 1153746..1154567 (-) 822 WP_002451644.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FOC62_RS05905 (FOC62_05915) tenA 1154560..1155249 (-) 690 WP_002451645.1 thiaminase II -
  FOC62_RS05910 (FOC62_05920) - 1155591..1156322 (-) 732 WP_002451646.1 transglycosylase family protein -
  FOC62_RS05915 (FOC62_05925) ssb 1156737..1157114 (-) 378 WP_002451647.1 single-stranded DNA-binding protein Machinery gene
  FOC62_RS05920 (FOC62_05930) - 1157302..1157742 (+) 441 WP_002451648.1 YwpF-like family protein -
  FOC62_RS05925 (FOC62_05935) fabZ 1157789..1158229 (-) 441 WP_002451649.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FOC62_RS05930 (FOC62_05940) murA 1158273..1159538 (-) 1266 WP_002451650.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FOC62_RS05935 (FOC62_05945) - 1159650..1159883 (-) 234 WP_002451651.1 DUF1146 family protein -
  FOC62_RS05940 (FOC62_05950) - 1160035..1160439 (-) 405 WP_002451652.1 F0F1 ATP synthase subunit epsilon -
  FOC62_RS05945 (FOC62_05955) atpD 1160459..1161871 (-) 1413 WP_002451653.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14366.24 Da        Isoelectric Point: 6.9043

>NTDB_id=450199 FOC62_RS05915 WP_002451647.1 1156737..1157114(-) (ssb) [Staphylococcus warneri strain FDAARGOS_754]
MLNKIVLVGRLTKDAQIYEKEEGSKVATFCVATERNYKDQNNEIACDYLYCKAFGKTATNIEKFTSQGSLVGITGQMRSR
KYEKDNQTHFVTEIYVETIKFMSSKTKESNILSNEYNEAQNECFI

Nucleotide


Download         Length: 378 bp        

>NTDB_id=450199 FOC62_RS05915 WP_002451647.1 1156737..1157114(-) (ssb) [Staphylococcus warneri strain FDAARGOS_754]
ATGTTAAATAAAATAGTTTTAGTTGGTAGACTTACAAAGGATGCCCAAATTTATGAAAAGGAGGAAGGTAGTAAAGTAGC
AACATTTTGCGTTGCTACGGAAAGAAATTATAAAGATCAGAATAATGAAATCGCATGCGATTATCTATATTGCAAAGCCT
TTGGGAAAACAGCTACGAATATTGAAAAGTTTACATCTCAAGGATCTTTAGTAGGTATTACTGGCCAAATGCGATCACGT
AAGTATGAAAAAGATAATCAGACACATTTTGTAACTGAAATTTATGTAGAAACAATTAAATTTATGTCCTCTAAGACAAA
AGAATCCAATATCCTCTCTAATGAATATAATGAAGCACAAAATGAATGCTTCATATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

77.193

91.2

0.704
  ssb Staphylococcus aureus MW2

76.316

91.2

0.696
  ssb Latilactobacillus sakei subsp. sakei 23K

34.328

100

0.368