Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   I6H05_RS02630 Genome accession   NZ_CP065604
Coordinates   560472..562553 (-) Length   693 a.a.
NCBI ID   WP_025298425.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain FDAARGOS_948     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 555472..567553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H05_RS02620 (I6H05_02620) murI 559124..559951 (-) 828 WP_005548345.1 glutamate racemase -
  I6H05_RS02625 (I6H05_02625) - 559982..560479 (-) 498 WP_025298424.1 chorismate--pyruvate lyase family protein -
  I6H05_RS02630 (I6H05_02630) recG 560472..562553 (-) 2082 WP_025298425.1 ATP-dependent DNA helicase RecG Machinery gene
  I6H05_RS02635 (I6H05_02635) spoT 562554..564677 (-) 2124 WP_025298426.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  I6H05_RS02640 (I6H05_02640) rpoZ 564723..564989 (-) 267 WP_005538631.1 DNA-directed RNA polymerase subunit omega -
  I6H05_RS02645 (I6H05_02645) gmk 565047..565685 (-) 639 WP_025298427.1 guanylate kinase -
  I6H05_RS02650 (I6H05_02650) gap 565927..566931 (+) 1005 WP_005568476.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  I6H05_RS02655 (I6H05_02655) - 567025..567441 (-) 417 WP_005541059.1 EamA family transporter -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77598.17 Da        Isoelectric Point: 8.4280

>NTDB_id=450078 I6H05_RS02630 WP_025298425.1 560472..562553(-) (recG) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
MSTQLLDAIPLTAISGVGAAVAEKLGKLGIFNLQDLLFHLPLRYEDRTRITPIADLQAEQYATIEGVVQSSEVQFGRRPM
LMVYLSDSTAKLALRFFNFNAGMKNSLQPGARVKAFGEVRRGRFMAEIHHPEYQIIHDNKPLVLAETLTPIYPATEGLKQ
TALRKLIAQALLVLDKTPIAELLPAECNPHPFDLKFAIQFLHNPPPDVSLTTLEEGRHPAQQRLIFEELLAYNLAMQKVR
SGIQANFAEPLSYQSDLKARFLAQLPFQPTNAQLRVTEDIERDVAQPYPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAVNFRRWFEPLGIQVGWLAGKVKGKQRVAELEKIKSGAVQMVVGTHALFQEEVEFHRLSLVIVDEQH
RFGVHQRLMLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRAEIIERVNVACT
QEKRQAYWVCTLIDESEMLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPNEKQAVMAQFKLAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQ
TGITEFKVANLMRDRKMLPTVQFYAKQLVQKYPQTADLLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=450078 I6H05_RS02630 WP_025298425.1 560472..562553(-) (recG) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
ATGAGCACCCAATTATTAGATGCGATTCCGTTAACGGCAATTTCCGGTGTTGGTGCCGCTGTGGCGGAAAAGTTAGGTAA
ATTGGGGATCTTCAATCTGCAAGATCTGTTATTTCACCTTCCCCTCCGTTATGAAGATCGCACCCGCATCACACCCATTG
CCGATTTGCAGGCAGAGCAGTACGCCACTATTGAAGGCGTCGTGCAAAGTAGCGAAGTGCAATTCGGGCGTCGTCCGATG
TTGATGGTCTATCTTTCCGACAGTACCGCCAAATTGGCGTTGCGCTTTTTTAATTTTAACGCCGGTATGAAAAACAGCTT
GCAGCCAGGTGCTCGGGTGAAAGCCTTTGGTGAGGTGCGTCGCGGGCGTTTCATGGCGGAAATTCATCATCCTGAATATC
AGATTATTCATGACAATAAACCGCTGGTTCTGGCAGAAACCCTCACGCCCATTTACCCTGCTACGGAAGGGTTGAAACAA
ACCGCTTTGCGAAAATTAATTGCGCAAGCCTTGTTGGTGTTGGATAAAACGCCCATAGCCGAATTGTTACCGGCGGAATG
TAATCCGCATCCTTTTGATTTAAAATTCGCCATTCAGTTCTTACATAACCCGCCACCCGATGTGTCATTAACGACCTTGG
AAGAAGGTAGACATCCCGCCCAGCAACGACTGATTTTTGAAGAGTTGCTGGCATATAACCTGGCGATGCAAAAAGTGCGG
TCAGGAATTCAAGCGAATTTTGCCGAGCCTTTGTCGTATCAATCAGATTTAAAAGCACGTTTTTTAGCGCAGTTGCCGTT
TCAGCCGACAAATGCACAGTTGCGTGTGACGGAAGATATTGAACGGGATGTGGCGCAACCTTACCCGATGATGCGTCTGG
TGCAGGGGGATGTCGGCTCCGGTAAAACCTTAGTGGCGGCGTTAGCGGCACTGCTCGCCATTGATAACGGTAAACAGGTG
GCATTGATGGCGCCGACGGAAATCTTAGCGGAACAGCACGCCGTGAACTTCCGCCGTTGGTTTGAACCGCTTGGCATTCA
AGTGGGCTGGCTGGCAGGAAAAGTCAAAGGCAAACAACGGGTTGCCGAGCTAGAGAAAATAAAAAGCGGTGCGGTACAAA
TGGTGGTGGGAACGCACGCGTTATTCCAGGAAGAGGTGGAATTTCATCGTTTGAGCTTGGTGATTGTTGACGAACAGCAC
CGTTTCGGCGTGCACCAACGACTCATGCTGCGGGAAAAAGGTAATCAGGCAGGCGTGTATCCTCATCAGTTAATCATGAC
CGCCACACCGATTCCACGTACGCTTGCCATGACGGTGTATGCGGATTTGGATACTTCGATTATCGACGAATTGCCACCGG
GGCGCACGCCGATTACCACCATTGCAATTTCCGAAGATCGTCGTGCAGAGATTATCGAACGGGTGAATGTGGCGTGTACG
CAGGAAAAACGGCAGGCTTATTGGGTTTGCACTCTGATTGATGAATCGGAAATGTTGGAGGCGCAGGCGGCGGAAGCGGT
GGCGGAAGATCTCCGTAAAATTCTACCGCACTTACGCATCGGCTTGGTACACGGGCGAATGAAACCGAATGAAAAACAAG
CGGTAATGGCGCAGTTTAAGCTTGCCGAATTAGATTTACTGGTCGCTACGACCGTGATTGAAGTGGGCGTGGATGTGCCG
AATGCCAGTTTGATGATTATTGAAAACGCTGAGCGCCTTGGCTTGTCCCAGCTTCACCAGTTACGTGGGCGGGTCGGGCG
TGGCAGTACAGCTTCGTTTTGTGTGTTAATGTACAAACCGCCGCTCGGTAAAATTTCGCAAAAACGCTTACAAGTCATGC
GCGACACGCAGGATGGTTTCGTGATTTCGGAAAAAGATCTGGAAATTCGTGGTCCGGGGGAAGTGCTTGGCACGAAACAA
ACAGGAATTACCGAATTTAAAGTGGCGAACCTCATGCGCGATCGCAAAATGCTGCCGACAGTGCAGTTTTATGCAAAACA
ACTAGTACAGAAATATCCGCAAACGGCGGACTTGTTGATTCGCCGCTGGCTAAATAATCGTGAGATTTATAGCAATGCCT
GA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-675)

RecG wedge domain (RecG_wedge)

(14-171)

DEAD/DEAH box helicase (DEAD)

(293-431)

Helicase conserved C-terminal domain (Helicase_C)

(479-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG Bacillus subtilis subsp. subtilis str. 168

40.795

97.98

0.4
  recG/mmsA Streptococcus pneumoniae R6

39.549

95.96

0.38
  recG/mmsA Streptococcus pneumoniae R36A

39.549

95.96

0.38