Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FOC68_RS05550 Genome accession   NZ_CP054006
Coordinates   1078080..1078709 (-) Length   209 a.a.
NCBI ID   WP_002450048.1    Uniprot ID   A0A1L8Y4G9
Organism   Staphylococcus hominis strain FDAARGOS_762     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073080..1083709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC68_RS05520 (FOC68_05525) - 1073776..1074309 (-) 534 WP_002450051.1 acyl-CoA thioesterase -
  FOC68_RS05525 (FOC68_05530) - 1074342..1075589 (-) 1248 WP_002450076.1 aminopeptidase -
  FOC68_RS05530 (FOC68_05535) - 1075601..1075807 (-) 207 WP_002450082.1 DUF1128 domain-containing protein -
  FOC68_RS05535 (FOC68_05540) - 1075949..1076413 (+) 465 WP_002450034.1 low molecular weight protein-tyrosine-phosphatase -
  FOC68_RS05540 (FOC68_05545) - 1076419..1076700 (+) 282 WP_002450075.1 hypothetical protein -
  FOC68_RS05545 (FOC68_05550) - 1076792..1078000 (+) 1209 WP_002450069.1 YihY/virulence factor BrkB family protein -
  FOC68_RS05550 (FOC68_05555) vraR 1078080..1078709 (-) 630 WP_002450048.1 two-component system response regulator VraR Regulator
  FOC68_RS05555 (FOC68_05560) vraS 1078711..1079745 (-) 1035 WP_002450020.1 sensor histidine kinase Regulator
  FOC68_RS05560 (FOC68_05565) liaF 1079742..1080443 (-) 702 WP_002450089.1 cell wall-active antibiotics response protein LiaF -
  FOC68_RS05565 (FOC68_05570) - 1080464..1080850 (-) 387 WP_002450072.1 hypothetical protein -
  FOC68_RS05570 (FOC68_05575) - 1081078..1082088 (+) 1011 WP_002450063.1 HoxN/HupN/NixA family nickel/cobalt transporter -
  FOC68_RS05575 (FOC68_05580) map 1082137..1082889 (-) 753 WP_002450057.1 type I methionyl aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23592.26 Da        Isoelectric Point: 5.3673

>NTDB_id=450077 FOC68_RS05550 WP_002450048.1 1078080..1078709(-) (vraR) [Staphylococcus hominis strain FDAARGOS_762]
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGSSGKEAIEKAHTLNPDLILMDLLMNDMDGVEATTQIKKDLPHIKVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKTYRGESVFEPEVLVKMRNRMKKKAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=450077 FOC68_RS05550 WP_002450048.1 1078080..1078709(-) (vraR) [Staphylococcus hominis strain FDAARGOS_762]
ATGACGATTAAAGTATTATTTGTAGATGATCATGAAATGGTTAGAATTGGTATTTCAAGTTATTTATCTACTCAATCTGA
TATTGAAGTAGTAGGGGAAGGATCATCAGGAAAAGAGGCAATTGAAAAAGCACATACGTTAAATCCTGATTTAATTTTAA
TGGATTTGTTAATGAATGATATGGACGGTGTAGAAGCGACGACACAAATAAAAAAAGATTTGCCTCACATCAAAGTAGTC
ATGTTAACAAGTTTTATAGAAGATAAAGAAGTATATAGGGCACTTGATGCAGGGGTTGATAGTTATATATTAAAAACGAC
AAGTGCAAGTGATATTGCAGAAGCAGTTAGAAAAACATATCGTGGAGAATCTGTATTTGAGCCAGAAGTTTTAGTAAAAA
TGAGAAATAGAATGAAGAAGAAAGCAGAATTATATGAAATGCTCACTGAACGTGAAATGGAAATATTGTTATTAATTGCT
AAAGGCTATTCTAATCAAGAAATTGCCAGTGCTTCACATATTACAATTAAAACAGTAAAAACACATGTGAGTAATATTTT
AAGTAAACTAGAGGTACAAGATAGAACACAAGCGGTTATTTATGCATTCCAACATAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L8Y4G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.737

100

0.947
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.378