Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOC68_RS02680 Genome accession   NZ_CP054006
Coordinates   507750..508622 (+) Length   290 a.a.
NCBI ID   WP_002448769.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_762     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 502750..513622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC68_RS02660 (FOC68_02660) ylqF 503636..504520 (+) 885 WP_002448797.1 ribosome biogenesis GTPase YlqF -
  FOC68_RS02665 (FOC68_02665) - 504504..505271 (+) 768 WP_002448745.1 ribonuclease HII -
  FOC68_RS02670 (FOC68_02670) sucC 505399..506565 (+) 1167 WP_002448800.1 ADP-forming succinate--CoA ligase subunit beta -
  FOC68_RS02675 (FOC68_02675) sucD 506587..507492 (+) 906 WP_002448725.1 succinate--CoA ligase subunit alpha -
  FOC68_RS02680 (FOC68_02680) dprA 507750..508622 (+) 873 WP_002448769.1 DNA-processing protein DprA Machinery gene
  FOC68_RS02685 (FOC68_02685) topA 508759..510828 (+) 2070 WP_002448837.1 type I DNA topoisomerase -
  FOC68_RS02690 (FOC68_02690) trmFO 510853..512160 (+) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FOC68_RS02695 (FOC68_02695) xerC 512266..513159 (+) 894 WP_002448815.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33521.62 Da        Isoelectric Point: 8.2454

>NTDB_id=450062 FOC68_RS02680 WP_002448769.1 507750..508622(+) (dprA) [Staphylococcus hominis strain FDAARGOS_762]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYCFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=450062 FOC68_RS02680 WP_002448769.1 507750..508622(+) (dprA) [Staphylococcus hominis strain FDAARGOS_762]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGGGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATTGTTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.77

100

0.369