Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FOC71_RS09355 Genome accession   NZ_CP053999
Coordinates   1844948..1846714 (-) Length   588 a.a.
NCBI ID   WP_003074425.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839948..1851714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS09340 (FOC71_09340) - 1841153..1842550 (+) 1398 WP_003074431.1 glycoside hydrolase family 1 protein -
  FOC71_RS09345 (FOC71_09345) - 1842679..1843113 (-) 435 WP_003074429.1 cupin domain-containing protein -
  FOC71_RS09350 (FOC71_09350) rcrQ 1843198..1844958 (-) 1761 WP_003074427.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS09355 (FOC71_09355) rcrP 1844948..1846714 (-) 1767 WP_003074425.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS09360 (FOC71_09360) - 1846707..1847165 (-) 459 WP_003074423.1 MarR family winged helix-turn-helix transcriptional regulator -
  FOC71_RS09365 (FOC71_09365) - 1847337..1848524 (-) 1188 WP_003074421.1 NADH-dependent flavin oxidoreductase -
  FOC71_RS09370 (FOC71_09370) - 1848790..1849200 (-) 411 WP_003074419.1 peptide deformylase -
  FOC71_RS09375 (FOC71_09375) scrK 1849266..1850165 (-) 900 WP_003074417.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65345.16 Da        Isoelectric Point: 6.6716

>NTDB_id=450035 FOC71_RS09355 WP_003074425.1 1844948..1846714(-) (rcrP) [Streptococcus intermedius strain FDAARGOS_769]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTRGTVISDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSDAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGLRVVRAYNAEDYQDDKFAGANDEVTRLNLFVSRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAVLPGRLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQPKTAKDIKGEVVFDNVSFRYTKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLAQAKSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLETNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=450035 FOC71_RS09355 WP_003074425.1 1844948..1846714(-) (rcrP) [Streptococcus intermedius strain FDAARGOS_769]
ATGGTTAAATTGTTTAAACGTTTAACTGTTAAAGAAGTAGGGATGATTATCATCAGTATCTTATTTACTTGTTTGGCAGT
TTACTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAGAGGAACAGTTATTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTCGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGACATTTTCAATCGTGTACTGGATTATTCAGATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACTCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGAAAATCAGAATACTGGCTATGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATCATGACGACAGTTTTGATGACGTTGGCCTTTCCAAAGCAATCTGTTATTCA
ACGATTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGCTTCGTGTTGTTCGGGCTTACAATGCTGAAG
ACTATCAAGATGATAAATTTGCAGGGGCAAATGATGAAGTGACTCGGTTGAATCTCTTTGTTAGTCGGCTCATGGCTATT
TTAAATCCGATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGTTTTACCAGGACGTTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCTTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGGCGGATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAACCAAAAACAGCTAAAGATATCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCAGTCATTGAACATGTTAGCTTTACGGCTAAAGCGGGCGAAACGGTGGCTTTTATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGATTTTGGACAAAGCAATGAAAGTCCATTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGGCACAAGCGAAATCATTTGTTGAAGAAAAAGAAGGTGGTCTGCACTCAGAGGTTGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAGCAGCGGTTGGCGATTGCGCGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAGACAGACCGTATTTTGCGAGAAGAATTGGCGAAAAAAGTGAAAGCTACAACCAGATTGATTG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAGGTTGTTGGGCAAGGGACT
CACAAAGAGCTACTAGAGACCAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-291)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.333

100

0.718