Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   FOC71_RS05995 Genome accession   NZ_CP053999
Coordinates   1184019..1184822 (+) Length   267 a.a.
NCBI ID   WP_003072978.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179019..1189822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS05975 (FOC71_05975) - 1179992..1181305 (+) 1314 WP_003072983.1 glycosyltransferase family 4 protein -
  FOC71_RS05980 (FOC71_05980) - 1181332..1181673 (+) 342 WP_003072981.1 hypothetical protein -
  FOC71_RS05985 (FOC71_05985) micA 1181971..1182672 (+) 702 WP_003072980.1 response regulator YycF Regulator
  FOC71_RS05990 (FOC71_05990) micB 1182665..1184017 (+) 1353 WP_003072979.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FOC71_RS05995 (FOC71_05995) vicX 1184019..1184822 (+) 804 WP_003072978.1 MBL fold metallo-hydrolase Regulator
  FOC71_RS06000 (FOC71_06000) - 1184831..1185190 (+) 360 WP_003072977.1 YbaN family protein -
  FOC71_RS06005 (FOC71_06005) rnc 1185580..1186278 (+) 699 WP_003072976.1 ribonuclease III -
  FOC71_RS06010 (FOC71_06010) smc 1186269..1189802 (+) 3534 WP_003072975.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29879.77 Da        Isoelectric Point: 6.0341

>NTDB_id=450021 FOC71_RS05995 WP_003072978.1 1184019..1184822(+) (vicX) [Streptococcus intermedius strain FDAARGOS_769]
MNEKGFKYSILASGSTGNCFYLETPKRKLLIDAGLSGKKITSLLSEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYHLD
IYANQDTWNAMETALGKIDVSQKHVFEMGKTKTFGDIDIESFGVSHDAVAPQFYRLMKDDKSFVLLTDTGYVSDRMAGII
ENADGYLIESNHDIEILRSGAYPWSLKQRILSDQGHLSNDDGAETMIRTLGIRTKKIYLGHLSKENNTKELAHITMVNQL
AQADLAVEHDFHVYDTSPDTATPLTNI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=450021 FOC71_RS05995 WP_003072978.1 1184019..1184822(+) (vicX) [Streptococcus intermedius strain FDAARGOS_769]
ATGAACGAGAAAGGATTTAAGTACAGTATTTTAGCGTCGGGTTCTACTGGTAATTGTTTCTATTTAGAAACCCCGAAGAG
AAAGTTGTTGATTGATGCAGGTTTATCCGGAAAGAAAATTACTAGTTTGTTGAGCGAAATTGATCGTAAGCCAGAGGATT
TGGATGCTATTTTGGTGACGCATGAACATAAAGACCATATTCATGGTGTGGGTGTTTTAGCACGGAAATATCATTTAGAT
ATTTATGCTAATCAAGATACTTGGAATGCCATGGAAACAGCGCTTGGAAAGATTGATGTCAGTCAGAAGCATGTTTTTGA
AATGGGAAAAACAAAAACATTTGGTGATATTGATATTGAAAGTTTTGGGGTCAGTCATGATGCGGTTGCACCACAATTCT
ATCGATTGATGAAAGATGACAAAAGTTTTGTTTTGCTGACGGACACTGGTTATGTCAGTGATCGGATGGCAGGAATCATT
GAAAATGCAGATGGCTATTTGATTGAATCAAATCATGATATTGAAATCCTGCGCAGTGGTGCTTATCCTTGGAGTTTAAA
GCAGCGAATTTTGTCTGATCAAGGGCATTTGTCGAATGATGATGGTGCTGAAACTATGATTCGCACTCTCGGGATTCGGA
CAAAGAAAATCTATCTAGGACATCTCAGCAAGGAAAATAATACTAAAGAATTGGCTCATATTACAATGGTCAATCAATTG
GCACAAGCTGACTTGGCAGTGGAGCATGATTTTCATGTGTATGATACCTCACCAGATACGGCGACACCTTTAACTAATAT
TTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

80.899

100

0.809