Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FOC71_RS03985 Genome accession   NZ_CP053999
Coordinates   761274..763232 (+) Length   652 a.a.
NCBI ID   WP_003073792.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 756274..768232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS03965 (FOC71_03965) rsmH 756350..757300 (+) 951 WP_003073798.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  FOC71_RS03970 (FOC71_03970) ftsL 757309..757626 (+) 318 WP_003070323.1 cell division protein FtsL -
  FOC71_RS03975 (FOC71_03975) pbp2X 757630..759888 (+) 2259 WP_003073796.1 penicillin-binding protein PBP2X -
  FOC71_RS03980 (FOC71_03980) mraY 759890..760873 (+) 984 WP_003073794.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  FOC71_RS03985 (FOC71_03985) amiA 761274..763232 (+) 1959 WP_003073792.1 peptide ABC transporter substrate-binding protein Regulator
  FOC71_RS03990 (FOC71_03990) - 763492..764058 (+) 567 Protein_756 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  FOC71_RS03995 (FOC71_03995) - 764109..764519 (+) 411 WP_003073787.1 effector binding domain-containing protein -
  FOC71_RS04005 (FOC71_04005) - 764932..765813 (+) 882 WP_003073785.1 class II fructose-bisphosphate aldolase -
  FOC71_RS04015 (FOC71_04015) - 766251..766697 (+) 447 WP_003073783.1 LytTR family DNA-binding domain-containing protein -
  FOC71_RS04020 (FOC71_04020) - 766703..767365 (+) 663 WP_003073781.1 hypothetical protein -
  FOC71_RS04025 (FOC71_04025) rpmB 767500..767688 (+) 189 WP_003025909.1 50S ribosomal protein L28 -
  FOC71_RS04030 (FOC71_04030) - 767863..768228 (+) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72530.00 Da        Isoelectric Point: 9.1503

>NTDB_id=450004 FOC71_RS03985 WP_003073792.1 761274..763232(+) (amiA) [Streptococcus intermedius strain FDAARGOS_769]
MKSSKWIIATGVVLSAGILLAGCGKSSSSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSKVGVKA
IDDYTVQYTLSRAETYWNSKTTNNILFPVNAAFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTEGAYSAARLYPNSSSFASVKKQYNNNIIYSLQDATSYYYNFNLNRQSYHHTSKKTDA
QKTATQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDLVSSKLVKYGSEWSDMNLAD
AQDAYYNPAKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGKDNVVIDIQQMSSDELNNIG
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLKNFGLEPGQEDDKIKTVGLDTYTKMLEEANAETNETKRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
KKAQDNYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=450004 FOC71_RS03985 WP_003073792.1 761274..763232(+) (amiA) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAATCATCAAAATGGATTATTGCAACGGGAGTTGTACTAAGTGCTGGAATTTTATTGGCTGGTTGTGGCAAGTCAAG
CTCTAGCACATCGACATATTCATATGTGTATACACAAGATCCAGATACGCTGAATTATTTGATGGCGAATCGAGCAACAA
CATCAGATGTTGTTACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGGAACTTAGTTCCAGCACTTGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACGTATACGTATAAATTACGTAAAGACGCGAAATGGTACACATCAGAAGGCGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTAACTGGTTTGAAATATGCTGCAGATAACAAATCCGAAGCTCTTTACC
TTGTACAAGACTCTGTCAAAGGATTAGATGCGTATATCAAAGGTGAGACAAAAGATTTTTCAAAAGTAGGTGTAAAAGCT
ATTGATGATTATACAGTACAGTATACTCTGAGTCGTGCAGAAACTTATTGGAATTCAAAAACAACCAATAACATCCTCTT
CCCAGTCAATGCAGCCTTCTTAAAATCCCAAGGAAAGAATTTTGGTTCTGTAAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCAAAAAATCCTCATTATTATGACAAAAAGAATGTT
CATTTAGACAATATAAAGTTGACATATTATGATGGATCGGACCAAGAAGCGCTTATTCGAAACTTTACTGAGGGTGCTTA
TAGTGCAGCCCGTCTTTATCCAAATAGTTCTAGTTTTGCTTCTGTTAAGAAACAGTATAATAACAATATCATCTATAGTT
TACAAGATGCGACCAGTTACTATTATAACTTTAACTTAAATCGTCAGTCCTATCACCATACATCTAAGAAAACAGATGCA
CAAAAAACTGCAACACAGGAAGCAGTACTCAATAAAGCATTTCGTCAAGCAATCAATTTCGCCTACAATCGAACGTCTTA
TGGTGCGCAAAGCAATGGGAAAGATGGAGCGACAAAAGTATTGCGGAATACACTTGTTCCACCAACGTTTGTTTCAATTG
GTGATAAAACATTTGGGGATCTCGTATCTTCCAAATTGGTGAAGTATGGTTCAGAATGGTCTGATATGAATTTGGCTGAT
GCACAGGATGCTTACTACAATCCAGCAAAAGCAAAAGCAAAATTTGCACAAGCAAAAGCAGAGTTGCAAGCTAAAGGAGT
TCAGTTCCCAATTCATTTAGATGTACCGGCTGATCAGACAAGTAAAATTGGTGTTCAATGGGAAAGTTCTATGAAACAAT
CTGTTGAGTCTGTTTTAGGAAAAGATAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAATTGAACAACATTGGC
TACTTTGCTAATACTGCTGCTCAAAAAGATTATGATTTATACAATGGCGGATGGTCAGGGGACTATCAAGATCCATCAAC
TTATCTAGATACCTTGAATACAAAAAATGGTGGTAGTTTGAAGAACTTTGGCTTGGAACCTGGTCAAGAGGACGATAAGA
TAAAAACTGTTGGTTTGGATACCTATACTAAAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGACGAAGCGTTATGAG
AAATATGCTGAAGCGCAGGCGTGGTTGATTGATAGTGGGTTGACAATGCCAAATCTTTCTCTTGGAGGAACACCATCTGT
GACAAAGACAGTTCCGTTTAGCCGTTCATATTCTTTAGTAGGAATTAAGGGTGGTTCAAGCAACTACTTTAAATATGTTA
AGTTGCAAGATAAAATTGTGACGACCAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCTTCTAAT
AAAAAAGCACAAGATAACTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.686

100

0.581
  amiA3 Streptococcus thermophilus LMD-9

57.078

100

0.575
  amiA3 Streptococcus thermophilus LMG 18311

56.925

100

0.574