Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   FOC73_RS03425 Genome accession   NZ_CP053998
Coordinates   746960..747997 (-) Length   345 a.a.
NCBI ID   WP_002884555.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 741960..752997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS03400 (FOC73_03400) ilvD 742232..743935 (-) 1704 WP_002884316.1 dihydroxy-acid dehydratase -
  FOC73_RS03405 (FOC73_03405) - 744063..745244 (+) 1182 WP_002884589.1 NAD(P)/FAD-dependent oxidoreductase -
  FOC73_RS03415 (FOC73_03415) trmB 745460..746101 (-) 642 WP_002884443.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FOC73_RS03420 (FOC73_03420) ccrZ 746111..746902 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  FOC73_RS03425 (FOC73_03425) pptB 746960..747997 (-) 1038 WP_002884555.1 ABC transporter permease Regulator
  FOC73_RS03430 (FOC73_03430) pptA 747994..748725 (-) 732 WP_002884531.1 ABC transporter ATP-binding protein Regulator
  FOC73_RS03435 (FOC73_03435) - 748790..749209 (+) 420 WP_002884364.1 HIT family protein -
  FOC73_RS03440 (FOC73_03440) - 749206..749505 (+) 300 WP_002884229.1 hypothetical protein -
  FOC73_RS03445 (FOC73_03445) - 749685..749852 (-) 168 WP_002884708.1 hypothetical protein -
  FOC73_RS03450 (FOC73_03450) - 749870..750334 (-) 465 WP_172855709.1 hypothetical protein -
  FOC73_RS03455 (FOC73_03455) - 750428..751036 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  FOC73_RS09725 - 751054..751179 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40008.54 Da        Isoelectric Point: 10.6093

>NTDB_id=449930 FOC73_RS03425 WP_002884555.1 746960..747997(-) (pptB) [Streptococcus salivarius strain FDAARGOS_771]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLGYVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAIAILKYFIFQKKAQPFYKQS
GLNWTEAIAVENKRQQSILKFFSLFTNVKGITSSVKRRAYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAVCLFDLKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=449930 FOC73_RS03425 WP_002884555.1 746960..747997(-) (pptB) [Streptococcus salivarius strain FDAARGOS_771]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGA
TCACTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGA
ATCCATGGGCAATCATTCTTGGTTTGCTTGTGCTTTGTCTGTTATTGCCTTTTTGGGGTAATATTGCGACTTATTTAGAA
CCTGCGGACAAGCACTACCTCTTGGTGAAGGAAGAAGAGGTGCTAGGCTATGTTAAGAAGGCAACAGGGCGTGCTTTTAG
ATTTTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCCCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAG
TTATCCTTGTAGCTGTGGCTATTGCCATTCTTAAGTACTTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCT
GGACTGAATTGGACTGAGGCTATTGCAGTGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAAC
ATACCTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTGTTTGCCCTA
ACACTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCGGTTGGAAAAGACATGCAGGTGA
GCAATCTGAAACGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTGTTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

95.64

99.71

0.954

  pptB Streptococcus thermophilus LMD-9

91.57

99.71

0.913