Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOC77_RS00470 Genome accession   NZ_CP053989
Coordinates   89211..89729 (-) Length   172 a.a.
NCBI ID   WP_047944589.1    Uniprot ID   -
Organism   Niallia circulans strain FDAARGOS_783     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 84211..94729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC77_RS00450 (FOC77_00450) dnaB 84528..85892 (-) 1365 WP_047944586.1 replicative DNA helicase -
  FOC77_RS00455 (FOC77_00455) rplI 86142..86591 (-) 450 WP_047944587.1 50S ribosomal protein L9 -
  FOC77_RS00460 (FOC77_00460) - 86588..88561 (-) 1974 WP_061797251.1 DHH family phosphoesterase -
  FOC77_RS00465 (FOC77_00465) rpsR 88933..89169 (-) 237 WP_047944615.1 30S ribosomal protein S18 -
  FOC77_RS00470 (FOC77_00470) ssbA 89211..89729 (-) 519 WP_047944589.1 single-stranded DNA-binding protein Machinery gene
  FOC77_RS00475 (FOC77_00475) rpsF 89786..90076 (-) 291 WP_047944590.1 30S ribosomal protein S6 -
  FOC77_RS00480 (FOC77_00480) - 90242..91393 (-) 1152 WP_047944591.1 glycosyltransferase family 1 protein -
  FOC77_RS00485 (FOC77_00485) ychF 91560..92660 (-) 1101 WP_061797253.1 redox-regulated ATPase YchF -
  FOC77_RS00490 (FOC77_00490) - 92840..93040 (-) 201 WP_047944593.1 DUF951 domain-containing protein -
  FOC77_RS00495 (FOC77_00495) - 93061..93912 (-) 852 WP_047944594.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19316.15 Da        Isoelectric Point: 4.8107

>NTDB_id=449766 FOC77_RS00470 WP_047944589.1 89211..89729(-) (ssbA) [Niallia circulans strain FDAARGOS_783]
MMNRVVLVGRLTKDPDLRYTPSGVAVASFTLAVNRTFTNQQGEREADFINCVIWRKPAENVANFLKKGSLAGVDGRIQTR
SYDGQDGKRVYVTEVLAESVQFLEPRNSSGNNRSDNMNYGAPREQDNPFGGSNNYQNQRPQTNRNNQDYTKVDEDPFANS
GQIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=449766 FOC77_RS00470 WP_047944589.1 89211..89729(-) (ssbA) [Niallia circulans strain FDAARGOS_783]
ATGATGAATCGGGTAGTTCTTGTTGGCCGTCTAACGAAGGATCCTGACTTGCGTTATACACCGAGTGGAGTTGCTGTGGC
TTCTTTCACACTTGCGGTTAACCGTACTTTTACGAACCAGCAAGGGGAAAGAGAAGCAGACTTCATTAACTGTGTTATTT
GGAGAAAACCAGCAGAAAACGTTGCTAACTTCTTGAAAAAAGGGAGTTTAGCAGGTGTTGATGGTCGTATTCAAACTCGT
AGCTATGATGGACAAGACGGAAAACGCGTGTATGTAACAGAAGTATTAGCAGAAAGTGTTCAGTTCTTAGAACCTAGAAA
CAGCTCTGGTAATAATAGAAGTGACAACATGAATTATGGAGCCCCAAGAGAACAAGATAATCCTTTTGGAGGATCAAATA
ATTATCAGAATCAGCGACCTCAAACAAATAGAAACAATCAAGATTATACAAAAGTGGATGAAGATCCATTTGCAAATAGC
GGTCAAATCGATATTTCAGATGATGATCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.934

100

0.698
  ssb Latilactobacillus sakei subsp. sakei 23K

57.803

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.628

0.401