Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOC80_RS26360 Genome accession   NZ_CP053987
Coordinates   5690956..5692017 (-) Length   353 a.a.
NCBI ID   WP_056322539.1    Uniprot ID   A0A2S0I4U9
Organism   Achromobacter denitrificans strain FDAARGOS_786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5685956..5697017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC80_RS26345 (FOC80_26345) metE 5686746..5689043 (-) 2298 WP_062684516.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FOC80_RS26350 (FOC80_26350) - 5689185..5690102 (+) 918 WP_062684517.1 LysR family transcriptional regulator -
  FOC80_RS26355 (FOC80_26355) recX 5690124..5690828 (-) 705 WP_062684518.1 recombination regulator RecX -
  FOC80_RS26360 (FOC80_26360) recA 5690956..5692017 (-) 1062 WP_056322539.1 recombinase RecA Machinery gene
  FOC80_RS26365 (FOC80_26365) - 5692335..5693024 (+) 690 WP_062684519.1 response regulator transcription factor -
  FOC80_RS26370 (FOC80_26370) - 5693140..5694516 (+) 1377 WP_087881479.1 sensor histidine kinase -
  FOC80_RS26375 (FOC80_26375) - 5694699..5696375 (+) 1677 WP_087881478.1 MFS transporter -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37875.26 Da        Isoelectric Point: 5.3334

>NTDB_id=449734 FOC80_RS26360 WP_056322539.1 5690956..5692017(-) (recA) [Achromobacter denitrificans strain FDAARGOS_786]
MDDKTTKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVVDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH
KDMAIEIENRVRENQGIVSRAAEFVPTAEDTAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=449734 FOC80_RS26360 WP_056322539.1 5690956..5692017(-) (recA) [Achromobacter denitrificans strain FDAARGOS_786]
ATGGACGACAAAACCACCAAGGCCGCCGCATCGGAAAAGGCCAAGGCACTTGCCGCCGCGCTTTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTACGGCGACAACGAAGTCTCGCACGACATCCAGGTGGTTTCCACGGGTTCCCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGTCCGGAATCCTCGGGCAAG
ACCACGCTGACCCTGCAGGTGGTCGCTGAAATGCAGAAGCTGGGCGGCACTTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGCGTGAACCTGGCCGACCTGCTGATCTCGCAGCCGGATACCGGCGAACAGGCCC
TGGAAATCACCGACGCGCTGGTGCGCTCGGGTTCCGTCGACCTGATCGTCGTCGACTCGGTGGCCGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGATTCGTTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGCCACCATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CGGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCATCGGTGCGCCTGGACATCCGCCGCATCGGCTCGATCAAG
AAGGGCGACGAAGTCGTGGGCAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCCCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTACGGCGCCGGCATTTCGCGCGAAGGCGAGATCATCGATCTGGGCGTGGCCGCCAACGTGGTGGACA
AGTCCGGCGCGTGGTACAGCTACAACGGCAACCGCATCGGCCAGGGCAAGGACAATGTCCGCGAGTACCTGAAAGAGCAC
AAGGACATGGCCATCGAGATCGAGAACCGCGTGCGCGAGAACCAGGGCATCGTCAGCCGCGCCGCTGAATTCGTGCCCAC
GGCGGAAGACACCGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0I4U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.534

99.717

0.813
  recA Pseudomonas stutzeri DSM 10701

72.141

96.601

0.697
  recA Neisseria gonorrhoeae MS11

72.561

92.918

0.674
  recA Neisseria gonorrhoeae MS11

72.561

92.918

0.674
  recA Neisseria gonorrhoeae strain FA1090

72.561

92.918

0.674
  recA Acinetobacter baylyi ADP1

69.501

96.601

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.52

90.935

0.669
  recA Vibrio cholerae strain A1552

73.52

90.935

0.669
  recA Acinetobacter baumannii D1279779

72.897

90.935

0.663
  recA Glaesserella parasuis strain SC1401

71.651

90.935

0.652
  recA Latilactobacillus sakei subsp. sakei 23K

63.743

96.884

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.865

94.334

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.635

0.603
  recA Helicobacter pylori 26695

61.383

98.3

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

92.351

0.603
  recA Helicobacter pylori strain NCTC11637

61.095

98.3

0.601
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

91.501

0.578
  recA Streptococcus pneumoniae TIGR4

59.706

96.317

0.575
  recA Streptococcus pneumoniae D39

59.706

96.317

0.575
  recA Streptococcus pneumoniae R6

59.706

96.317

0.575
  recA Streptococcus pneumoniae Rx1

59.706

96.317

0.575
  recA Streptococcus mitis NCTC 12261

59.118

96.317

0.569
  recA Streptococcus mitis SK321

59.118

96.317

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.118

96.317

0.569
  recA Streptococcus pyogenes NZ131

59.701

94.901

0.567
  recA Streptococcus mutans UA159

57.941

96.317

0.558