Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FOC87_RS13845 Genome accession   NZ_CP053981
Coordinates   2693852..2694565 (+) Length   237 a.a.
NCBI ID   WP_000429324.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain FDAARGOS_793     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2688852..2699565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC87_RS13820 (FOC87_13820) - 2689575..2690201 (+) 627 WP_000432996.1 LysE family translocator -
  FOC87_RS13825 (FOC87_13825) - 2690739..2691656 (+) 918 WP_000539071.1 ATP-binding cassette domain-containing protein -
  FOC87_RS13830 (FOC87_13830) - 2691653..2692405 (+) 753 WP_000593662.1 ABC transporter permease -
  FOC87_RS13835 (FOC87_13835) - 2692418..2693149 (+) 732 WP_000830531.1 ABC transporter permease -
  FOC87_RS13840 (FOC87_13840) - 2693172..2693522 (+) 351 WP_000722584.1 YxeA family protein -
  FOC87_RS13845 (FOC87_13845) scnR 2693852..2694565 (+) 714 WP_000429324.1 response regulator transcription factor Regulator
  FOC87_RS13850 (FOC87_13850) - 2694566..2696002 (+) 1437 WP_000398538.1 sensor histidine kinase KdpD -
  FOC87_RS13855 (FOC87_13855) - 2696362..2697309 (+) 948 WP_000356562.1 sugar-binding transcriptional regulator -
  FOC87_RS13860 (FOC87_13860) deoC 2697616..2698287 (+) 672 WP_001017446.1 deoxyribose-phosphate aldolase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27115.64 Da        Isoelectric Point: 5.8194

>NTDB_id=449674 FOC87_RS13845 WP_000429324.1 2693852..2694565(+) (scnR) [Bacillus thuringiensis strain FDAARGOS_793]
MENLKNKKILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVMLPDGDGFSLLSSIRKFSSTP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILKRVYSSSVTERLSIFRLGEQIVDLESAVVHRGQKEMPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKLLVKETY

Nucleotide


Download         Length: 714 bp        

>NTDB_id=449674 FOC87_RS13845 WP_000429324.1 2693852..2694565(+) (scnR) [Bacillus thuringiensis strain FDAARGOS_793]
ATGGAAAATCTAAAAAACAAAAAAATATTAATTGTGGACGATGAACAAGAAATCAGAATAATGATTGAAAGATTTTTAAG
AAAAGAGGGATTTTTTCGCATTTATACTGCTGTTGACTGCGCTTCTGCTCTGTCATTTTGCCAGGTAGACAATCCAGATA
TCGTAATTCTGGATGTTATGTTACCGGATGGTGACGGATTTTCTTTACTGTCTTCCATTAGGAAGTTTTCGAGCACACCG
GTTCTTTTTCTCTCTGCGCGGGGAGAGGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACATGGTGAA
GCCATTTCTGCCACGTGAGCTGGTATTACGGCTCATGGCGATTTTGAAACGTGTATATTCTTCCTCGGTCACAGAGCGTC
TATCTATCTTTAGATTAGGAGAACAAATCGTTGATCTTGAAAGCGCTGTTGTACACAGAGGGCAGAAAGAGATGCCATTG
ACGGCAAAGGAGCATGCCATTCTTGTAAAGCTTTATGAAAATCAAGGACGTATCATTACAAATGATGCCTTATGTCAGGC
TGTTTGGGGAGATGACAGCTACGGTCTTGAGAATACTTTGATGGTTCATATCAGGCGGATACGTGAAAAGATTGAGCTGG
ATCCTTCCAAACCAATCTATCTTCTCACCTTCAGGGGATTGGGATATAAATTGCTAGTAAAGGAGACGTATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.351

97.468

0.481
  vicR Streptococcus mutans UA159

41.921

96.624

0.405
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401