Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   STT55_RS03550 Genome accession   NZ_CP065502
Coordinates   656705..657445 (+) Length   246 a.a.
NCBI ID   WP_173940476.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST55     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 651705..662445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS03525 (STT55_03490) - 653235..653597 (+) 363 WP_039671040.1 SAG1252 family conjugative relaxosome accessory protein -
  STT55_RS03530 (STT55_03495) mobC 653600..653965 (+) 366 WP_039671039.1 plasmid mobilization relaxosome protein MobC -
  STT55_RS03535 (STT55_03500) - 653952..655835 (+) 1884 WP_173940477.1 SAG1250 family conjugative relaxase -
  STT55_RS03540 - 655768..656163 (-) 396 WP_232085807.1 hypothetical protein -
  STT55_RS03545 (STT55_03510) - 656362..656703 (+) 342 WP_024404826.1 LytTR family DNA-binding domain-containing protein -
  STT55_RS03550 (STT55_03515) comE/blpR 656705..657445 (+) 741 WP_173940476.1 response regulator transcription factor Regulator
  STT55_RS03555 (STT55_03520) - 657456..658796 (+) 1341 WP_039671036.1 GHKL domain-containing protein -
  STT55_RS03560 (STT55_03525) - 658844..658999 (-) 156 WP_096811960.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  STT55_RS03565 (STT55_03530) comB 659098..660459 (-) 1362 WP_173940475.1 bacteriocin secretion accessory protein Regulator

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 28895.09 Da        Isoelectric Point: 6.7719

>NTDB_id=449552 STT55_RS03550 WP_173940476.1 656705..657445(+) (comE/blpR) [Streptococcus thermophilus strain ST55]
MNIFVMEDDFMQQARIEKIITKLLEKHNIVPKKFEISGEPHQLLQAIEEKGVHQLFFLDIEIKEDELKGLQVAKQIREID
PYASIVFVTTHSEFMPLSFRYQVSALDYIDKELGVTEFESRIEAALLHTHNKDNSAVSDDSFYFKSKYAQVQYPFNEVYY
IETSPRPHRVILYTKTDRMEFTASLSDILKQDKRLVQCHRSFAINPRNVVKVDRNEKQIYFPNGATCFISRQKLESTLAV
IDRLHR

Nucleotide


Download         Length: 741 bp        

>NTDB_id=449552 STT55_RS03550 WP_173940476.1 656705..657445(+) (comE/blpR) [Streptococcus thermophilus strain ST55]
ATGAATATCTTTGTAATGGAAGATGATTTTATGCAACAAGCGAGAATTGAGAAGATTATTACTAAGCTGTTAGAAAAGCA
CAACATCGTTCCGAAAAAATTTGAAATTTCAGGAGAACCTCATCAGCTACTTCAAGCAATAGAAGAAAAAGGAGTACATC
AGCTCTTCTTTTTAGATATTGAGATTAAGGAAGACGAACTAAAAGGACTTCAAGTCGCTAAACAAATTAGAGAGATTGAC
CCTTATGCTAGTATTGTTTTTGTGACAACACACTCCGAGTTTATGCCCTTATCTTTCAGGTACCAGGTATCTGCCTTGGA
CTATATTGACAAAGAGCTTGGAGTTACCGAATTTGAATCGCGAATAGAAGCAGCTTTACTTCATACTCACAATAAGGACA
ATAGCGCCGTATCGGATGATTCATTCTATTTTAAGTCCAAATATGCTCAAGTACAATACCCATTCAATGAAGTGTACTAC
ATCGAGACTTCTCCCCGCCCTCATCGTGTTATCCTTTATACCAAGACAGACCGAATGGAGTTCACAGCAAGTTTGTCAGA
CATTTTGAAACAAGATAAACGACTTGTACAATGTCATCGTTCGTTTGCAATCAATCCGAGGAATGTTGTTAAAGTGGATA
GAAATGAAAAACAGATCTACTTTCCTAATGGAGCCACCTGTTTTATTTCAAGGCAAAAGCTAGAATCAACTTTAGCTGTT
ATTGATAGACTGCATAGATAA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-235)

Response regulator receiver domain (Response_reg)

(3-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

53.306

98.374

0.524
  comE/comE1 Streptococcus equinus JB1

41.423

97.154

0.402
  comE/comE2 Streptococcus equinus JB1

36.885

99.187

0.366