Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FOC90_RS08505 Genome accession   NZ_CP053972
Coordinates   978187..978621 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus thuringiensis strain FDAARGOS_796     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 973187..983621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC90_RS08490 (FOC90_08500) - 974365..974922 (+) 558 WP_000062064.1 PadR family transcriptional regulator -
  FOC90_RS08495 (FOC90_08505) metE 975435..977723 (+) 2289 WP_001007602.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FOC90_RS08500 (FOC90_08510) - 977761..978150 (-) 390 WP_000424022.1 competence protein ComJ -
  FOC90_RS08505 (FOC90_08515) nucA/comI 978187..978621 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  FOC90_RS08510 (FOC90_08520) - 978850..979599 (+) 750 WP_000388468.1 DUF3967 domain-containing protein -
  FOC90_RS08515 (FOC90_08525) kinB 979638..980912 (-) 1275 WP_000420367.1 sporulation sensor histidine kinase KinB -
  FOC90_RS08520 (FOC90_08530) - 981223..981423 (+) 201 WP_000929277.1 hypothetical protein -
  FOC90_RS08525 (FOC90_08535) - 981545..982708 (+) 1164 WP_000434585.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=449552 FOC90_RS08505 WP_000811494.1 978187..978621(-) (nucA/comI) [Bacillus thuringiensis strain FDAARGOS_796]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=449552 FOC90_RS08505 WP_000811494.1 978187..978621(-) (nucA/comI) [Bacillus thuringiensis strain FDAARGOS_796]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCTTCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGCGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549