Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GGS_RS10110 Genome accession   NC_018712
Coordinates   2085498..2086094 (-) Length   198 a.a.
NCBI ID   WP_015017499.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2080498..2091094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS10075 (GGS_1911) - 2080541..2080846 (-) 306 WP_003058733.1 DUF1292 domain-containing protein -
  GGS_RS10080 (GGS_1912) ruvX 2080857..2081276 (-) 420 WP_003053103.1 Holliday junction resolvase RuvX -
  GGS_RS10085 - 2081273..2081542 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  GGS_RS10090 (GGS_1913) spx 2081654..2082052 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  GGS_RS10095 (GGS_1914) recA 2082346..2083452 (-) 1107 WP_041784706.1 recombinase RecA Machinery gene
  GGS_RS10100 (GGS_1915) cinA 2083588..2084859 (-) 1272 WP_003058772.1 competence/damage-inducible protein A Machinery gene
  GGS_RS10105 (GGS_1916) - 2084928..2085488 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  GGS_RS10110 (GGS_1917) ruvA 2085498..2086094 (-) 597 WP_015017499.1 Holliday junction branch migration protein RuvA Machinery gene
  GGS_RS10115 (GGS_1918) - 2086096..2087316 (-) 1221 WP_003058727.1 MFS transporter -
  GGS_RS10120 (GGS_1919) hexB 2087327..2089309 (-) 1983 WP_003060855.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21825.13 Da        Isoelectric Point: 6.7330

>NTDB_id=44949 GGS_RS10110 WP_015017499.1 2085498..2086094(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=44949 GGS_RS10110 WP_015017499.1 2085498..2086094(-) (ruvA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCAAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACTTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68.02

99.495

0.677
  ruvA Streptococcus pneumoniae R6

68.02

99.495

0.677
  ruvA Streptococcus pneumoniae D39

68.02

99.495

0.677
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424

Multiple sequence alignment