Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   G4D73_RS08020 Genome accession   NZ_CP053947
Coordinates   1697587..1699809 (+) Length   740 a.a.
NCBI ID   WP_213686491.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692587..1704809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS08000 lnt 1693384..1694943 (+) 1560 WP_213686488.1 apolipoprotein N-acyltransferase -
  G4D73_RS08005 - 1695097..1695432 (-) 336 WP_213686489.1 hypothetical protein -
  G4D73_RS08010 gspG 1695717..1696151 (-) 435 WP_004278567.1 type II secretion system major pseudopilin GspG -
  G4D73_RS08015 gspF 1696231..1697436 (-) 1206 WP_213686490.1 type II secretion system inner membrane protein GspF -
  G4D73_RS08020 priA 1697587..1699809 (+) 2223 WP_213686491.1 primosomal protein N' Machinery gene
  G4D73_RS08025 - 1699885..1701738 (+) 1854 WP_191112674.1 cation:proton antiporter -
  G4D73_RS08030 - 1701789..1702664 (+) 876 WP_004278571.1 Hsp33 family molecular chaperone HslO -
  G4D73_RS08035 - 1702987..1703448 (+) 462 WP_148334810.1 DUF2147 domain-containing protein -
  G4D73_RS08040 - 1703933..1704262 (+) 330 WP_004278573.1 chaperone modulator CbpM -
  G4D73_RS08045 - 1704352..1704609 (+) 258 WP_004278574.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84140.11 Da        Isoelectric Point: 8.6443

>NTDB_id=449298 G4D73_RS08020 WP_213686491.1 1697587..1699809(+) (priA) [Acinetobacter sp. WY4]
MQNSHPDSSPLYRVRVAVPVHVFDCFDYTMSTAQFEQAQIGARVLVSFGRQNLVGVIIEKLSADTPLDPRFKLKAVTELL
DERAIIDAKVLSLLTWSAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKLLDPDAEAKVRRSDKQQEAYRILKLHPVG
TTENVLNMAGIETATLKALEKKEICACVLEPQDFNPQPMQLAQMPLTANPEQKHAVEQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLSLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVILGSATPSIDSYALVQHGKMQALELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAQCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELVTLGMGTSKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQIARM
PPYRYAILIRCESKDQAQNTEFLQKHAALLRQYPDLALDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=449298 G4D73_RS08020 WP_213686491.1 1697587..1699809(+) (priA) [Acinetobacter sp. WY4]
ATGCAAAATTCTCACCCAGATTCAAGTCCACTTTATCGCGTACGCGTTGCTGTACCTGTGCATGTATTTGATTGTTTTGA
TTACACGATGAGTACAGCACAATTTGAACAGGCACAGATTGGCGCACGTGTACTGGTGTCGTTTGGTCGGCAGAATCTGG
TCGGGGTGATTATCGAAAAACTATCCGCAGACACTCCTCTCGATCCGCGCTTTAAACTTAAGGCAGTGACCGAACTACTT
GATGAACGCGCCATTATAGATGCCAAAGTTTTAAGTTTGTTGACATGGTCAGCGCAGTATTACCAGTTTCCGATCGGTGA
AGTCGTCCACAGTGCCCTGCCGACTCTGTTGCGTCAGGGTAAGCCTTATAACCTGCTGGCCCGTACCTGGAAATTACTGG
ACCCTGATGCCGAGGCCAAAGTACGCCGTTCGGACAAGCAGCAGGAAGCTTACCGGATTTTAAAACTGCATCCGGTCGGG
ACCACTGAAAATGTGCTGAACATGGCCGGGATTGAAACCGCGACCTTAAAAGCGCTGGAGAAAAAAGAGATTTGCGCCTG
TGTGCTGGAGCCACAAGATTTCAATCCGCAGCCGATGCAGCTGGCACAAATGCCGCTGACCGCCAATCCTGAACAAAAAC
ATGCAGTCGAACAGGTATTAAAATATCGCAATCAATATCAAGCTTTTTTACTGGATGGTCTGACCGGCAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTGAAACAGGGCAAACAGGTGCTGGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGTTGCTGCATTCCGGGCTGAATGATTCCAAAC
GGCTACAAGCCTGGCAGTCGGCGGAAACCGGCAAAGCCTCAATCGTACTCGGTACACGTTCTGCCATTTATACCCCGATG
CCGAATCTGAGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCCCG
CGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCCGGTAATCTTAGGGTCAGCCACACCAAGCATTGACAGTTATG
CGCTGGTGCAACATGGCAAGATGCAGGCACTGGAGCTGAACCAGCGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGGATTAGCCTGCAATTGATTCAGGACATCAAAAAGCGCCTGGAGAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGCCGTGGCTATGCTCCCGTCCTGCTTTGTGGCAGCTGTGGCTGGCAGGCGCAAT
GTCCGCACTGTGATGCTAACTTCACTGTACACCGTCAGCCTTATCAGCATCTGCATTGCCATCACTGCGGCACTATTCAC
CGCATGCCGGAACACTGCCCGCAATGTCAGCATCAGGAACTGGTCACGCTAGGTATGGGTACCAGCAAAGTCGAAGAACA
TCTGAATGAACTCTTTCCGGATTTCGAGGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTCGGCAGCTGGCAGAAAA
TCTATGACAAGATTCAGAAAAGCGAACCTGCCATTTTGCTCGGCACCCAGATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTCACGCTGGTGGCGATTCTGGATATCGATTCCGGTCTGCTGAGTGTGGATTTCCGTGCTACTGAACGGACTGCACAGCT
GATCGTACAAGTCGCAGGTCGGGCCGGACGCGGCGAACATAAGGGCGATGTCTATCTGCAAACGCTCAGGCCTGATCATG
CCTTGCTGAACACCTTGGTCAATGAAAATTATCGCGTATTTGCCCAGCAAACCTTAAAAGAACGGCAGATAGCCAGAATG
CCGCCCTACCGTTATGCCATCCTGATTCGCTGTGAATCCAAGGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
AGCACTCCTCAGGCAATATCCTGATCTGGCGCTGGACATCTGGGGACCAATTCCTGCGCCAATGGAACGTAAGGCCGGAC
GCTATCAGTCGCATATGGTGCTATTGTCAGCGGATCGTCCACGTTTGCATTACTATGTGCGCAGCTGGTGGCAAAACATG
CTGCAGGACAAACCTTCTAGCATGAAGCTCACGCTAGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.099

99.595

0.708