Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   G4D73_RS08310 Genome accession   NZ_CP053947
Coordinates   1768292..1768618 (-) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763292..1773618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS08290 - 1763490..1764149 (-) 660 WP_004729299.1 FHA domain-containing protein -
  G4D73_RS08295 gspD 1764212..1766473 (-) 2262 WP_213686505.1 type II secretion system secretin GspD -
  G4D73_RS08300 - 1766512..1767366 (-) 855 WP_044113058.1 type II secretion system protein N -
  G4D73_RS08305 gspN 1767366..1768109 (-) 744 WP_213686506.1 type II secretion system protein N -
  G4D73_RS08310 hns 1768292..1768618 (-) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  G4D73_RS08315 - 1768760..1769188 (-) 429 WP_004278628.1 acyl-CoA thioesterase -
  G4D73_RS08320 - 1769197..1770390 (-) 1194 WP_213686507.1 heme biosynthesis protein HemY -
  G4D73_RS08325 - 1770397..1771236 (-) 840 WP_213686508.1 hypothetical protein -
  G4D73_RS08330 - 1771233..1772012 (-) 780 WP_213686509.1 uroporphyrinogen-III synthase -
  G4D73_RS08335 hemC 1772012..1772935 (-) 924 WP_044113065.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=449299 G4D73_RS08310 WP_026055760.1 1768292..1768618(-) (hns) [Acinetobacter sp. WY4]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=449299 G4D73_RS08310 WP_026055760.1 1768292..1768618(-) (hns) [Acinetobacter sp. WY4]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAGTCACTGATTGCTTCAAA
AAAAGATCAAGAAATTGAAGACGCTTATCAGCAAATCTTGGCAGTTGCCGAGAAAGTGGGTATGACAGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAGCGTAAGAAATCATCACGTAAGTCGGTTGAACCGCGTTACCGTAGCAAAAGCAATCCAGAC
GATACCTGGACTGGCCGTGGTAAACAACCGCGCTGGTTAGTGGCAGAATTGGAAAAAGGCGCAAAGCTGGATGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787