Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ST4067_RS07940 Genome accession   NZ_CP065496
Coordinates   1528146..1528877 (-) Length   243 a.a.
NCBI ID   WP_263604493.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4067     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1523146..1533877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS07915 (ST4067_07940) - 1523170..1523526 (-) 357 WP_082309125.1 DUF805 domain-containing protein -
  ST4067_RS07920 (ST4067_07945) - 1523746..1524042 (-) 297 WP_263604490.1 hypothetical protein -
  ST4067_RS07925 (ST4067_07950) - 1524378..1525628 (-) 1251 WP_263604491.1 glutamate-5-semialdehyde dehydrogenase -
  ST4067_RS07930 (ST4067_07955) proB 1525630..1526433 (-) 804 WP_011681591.1 glutamate 5-kinase -
  ST4067_RS07935 (ST4067_07960) - 1526554..1528143 (-) 1590 WP_263604492.1 ABC transporter permease -
  ST4067_RS07940 (ST4067_07965) pptA 1528146..1528877 (-) 732 WP_263604493.1 ABC transporter ATP-binding protein Regulator
  ST4067_RS07945 (ST4067_07970) - 1529153..1529886 (+) 734 Protein_1513 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27574.49 Da        Isoelectric Point: 4.8995

>NTDB_id=449283 ST4067_RS07940 WP_263604493.1 1528146..1528877(-) (pptA) [Streptococcus thermophilus strain 4067]
MIRFEHVTKRYENKDALSDLNLEIRDGEIFGLIGHNGAGKTTTISMLTSIIEASYGEVYVDDMALSQHRDAIKKKIAYVP
DSPDLFLNLTANDYWYFLTRIYDLEASQVEERLTDLMATFDLTENRYNLISSFSHGMRQKVVVIGALLVNPQIWVLDEPL
TGLDPQASYDLKEAMRNHAKEGNSVLFSTHVLSVAEQLCDRIGILKKGKLIFQGSIAELKYQYPDKDLETIYLEMAGRKV
GEV

Nucleotide


Download         Length: 732 bp        

>NTDB_id=449283 ST4067_RS07940 WP_263604493.1 1528146..1528877(-) (pptA) [Streptococcus thermophilus strain 4067]
ATGATTCGTTTTGAACATGTAACGAAACGTTATGAAAATAAGGATGCTCTCTCAGATCTTAATCTCGAGATTCGAGACGG
TGAAATCTTTGGTTTGATTGGTCACAATGGAGCTGGTAAAACTACGACTATTTCCATGTTGACGTCTATTATTGAAGCCA
GTTACGGAGAAGTTTACGTCGATGATATGGCCCTCAGCCAGCATCGTGATGCTATTAAGAAGAAAATAGCATATGTGCCA
GATTCACCAGACTTATTCTTAAATTTAACTGCTAATGACTATTGGTACTTTTTGACACGTATCTATGATTTGGAAGCTAG
TCAGGTTGAGGAACGTTTGACCGATCTCATGGCTACCTTTGACTTGACTGAAAATCGCTATAACCTCATTTCATCCTTCT
CTCACGGTATGCGTCAGAAGGTTGTTGTTATCGGTGCTCTTCTGGTTAATCCACAGATTTGGGTTTTGGATGAGCCCTTG
ACTGGTCTGGACCCACAGGCGTCTTATGATTTGAAAGAAGCCATGCGTAACCATGCTAAGGAGGGCAATAGCGTGCTCTT
CTCAACCCACGTTCTAAGTGTAGCTGAGCAGCTCTGTGATCGCATCGGAATTTTGAAGAAAGGAAAACTCATCTTCCAAG
GGTCTATAGCTGAACTTAAGTATCAGTACCCTGACAAGGATTTGGAAACCATTTATCTAGAAATGGCTGGACGTAAGGTC
GGGGAGGTGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

37.553

97.531

0.366