Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   FOC66_RS08360 Genome accession   NZ_CP053939
Coordinates   1747636..1747923 (-) Length   95 a.a.
NCBI ID   WP_003747589.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1742636..1752923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS08335 (FOC66_08335) - 1743672..1744337 (-) 666 WP_003749221.1 hypothetical protein -
  FOC66_RS08340 (FOC66_08340) pyrI 1744531..1744989 (-) 459 WP_003749219.1 aspartate carbamoyltransferase regulatory subunit -
  FOC66_RS08345 (FOC66_08345) pyrB 1745000..1745920 (-) 921 WP_003749217.1 aspartate carbamoyltransferase -
  FOC66_RS08350 (FOC66_08350) - 1745919..1746215 (+) 297 WP_003749216.1 hypothetical protein -
  FOC66_RS08355 (FOC66_08355) comP 1746966..1747460 (-) 495 WP_081456519.1 type IV pilin protein Machinery gene
  FOC66_RS08360 (FOC66_08360) comE 1747636..1747923 (-) 288 WP_003747589.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9823.54 Da        Isoelectric Point: 10.4923

>NTDB_id=449268 FOC66_RS08360 WP_003747589.1 1747636..1747923(-) (comE) [Neisseria mucosa strain FDAARGOS_758]
MKKFLFGVFAAMCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=449268 FOC66_RS08360 WP_003747589.1 1747636..1747923(-) (comE) [Neisseria mucosa strain FDAARGOS_758]
ATGAAGAAATTTTTATTTGGTGTATTTGCCGCCATGTGTACGGCGTTCTCTTTGGCTGCCGTGAACGTCAATACCGCCTC
TTCTGCGGAACTGGAGGCATTACCGGGTATCGGCCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474