Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOC66_RS08270 Genome accession   NZ_CP053939
Coordinates   1727831..1729021 (-) Length   396 a.a.
NCBI ID   WP_003749242.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1722831..1734021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS08245 (FOC66_08245) - 1722998..1723249 (-) 252 WP_003749253.1 YfhL family 4Fe-4S dicluster ferredoxin -
  FOC66_RS08250 (FOC66_08250) rsmD 1723372..1723944 (-) 573 WP_003749250.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOC66_RS08255 (FOC66_08255) - 1724201..1724896 (+) 696 WP_029609880.1 hypothetical protein -
  FOC66_RS08260 (FOC66_08260) topA 1724970..1727276 (-) 2307 WP_003749245.1 type I DNA topoisomerase -
  FOC66_RS08265 (FOC66_08265) - 1727350..1727805 (-) 456 WP_003749244.1 DUF494 family protein -
  FOC66_RS08270 (FOC66_08270) dprA 1727831..1729021 (-) 1191 WP_003749242.1 DNA-processing protein DprA Machinery gene
  FOC66_RS08275 (FOC66_08275) - 1729335..1730609 (-) 1275 WP_003749241.1 sigma-54 dependent transcriptional regulator -
  FOC66_RS08280 (FOC66_08280) - 1730596..1732722 (-) 2127 WP_003749239.1 PAS domain-containing sensor histidine kinase -
  FOC66_RS08285 (FOC66_08285) - 1732726..1733319 (-) 594 WP_003749237.1 DUF4390 domain-containing protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 42570.56 Da        Isoelectric Point: 6.1041

>NTDB_id=449266 FOC66_RS08270 WP_003749242.1 1727831..1729021(-) (dprA) [Neisseria mucosa strain FDAARGOS_758]
MTENERFAWLQLAFTPYIGAESFLVLLQQFGSAQAALSAPADKIAALVRHKQAAESWRNADKRALAQQSAEAALQWEMQD
GCRLLLLQDDDFPEMLTQGITAPPVLFLRGNAGLLHTPSAAIVGSRHATPQAMRIAKDFGRALSEKGIPVVSGMASGIDT
AAHQGALQADGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPLDTRPFAGNFPRRNRLIAALSQLTLVVEAALES
GSLITAKLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILHECPQLLQNTPVPSYSINKTVKPKNDQTKRL
QPKAIADEPQRPSENPPAASSTSTLLEAMGYDPIHSDILAQQTNTAAADVYAQLLEYELDGIVAALPGGRYQRVKA

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=449266 FOC66_RS08270 WP_003749242.1 1727831..1729021(-) (dprA) [Neisseria mucosa strain FDAARGOS_758]
ATGACGGAAAACGAGCGTTTTGCTTGGTTGCAACTGGCATTTACGCCCTATATCGGCGCAGAAAGTTTTTTGGTGCTGTT
GCAGCAATTCGGTAGTGCACAAGCTGCCTTGAGTGCGCCGGCAGACAAAATTGCCGCCCTGGTACGCCATAAACAGGCGG
CCGAGTCGTGGCGCAATGCGGACAAACGGGCTTTGGCGCAGCAGTCTGCCGAAGCCGCTTTACAATGGGAAATGCAGGAC
GGTTGCCGTTTGTTGCTGCTGCAAGATGATGATTTCCCTGAAATGCTGACGCAAGGCATTACCGCGCCGCCGGTCTTGTT
TTTGCGCGGCAATGCAGGACTGCTGCACACACCTTCTGCCGCGATTGTCGGCAGCCGCCATGCCACGCCGCAGGCAATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGAGTGAGAAAGGCATTCCCGTCGTATCGGGTATGGCTTCGGGTATCGATACC
GCCGCCCATCAGGGCGCATTGCAGGCAGATGGCGGCACCATTGCCGTCTGGGGAACCGGTATAGACCGCATTTATCCGCC
GTCCAATAAAAACCTTGCTTATGAAATCGCTGAAAAAGGATTGATTGTCAGCGAGTTTCCTTTAGACACGCGTCCGTTTG
CAGGCAATTTTCCGCGCCGCAACCGTCTGATTGCCGCGTTGTCGCAGCTGACATTGGTGGTCGAAGCGGCATTGGAATCC
GGTTCGCTGATTACTGCCAAGTTGGCGGCGGAGATGGGGCGCGAAGTGATGGCGGTGCCCGGTTCGATAGACAATCCACA
CAGCAAAGGCTGCCACAAGCTGATTAAAGACGGGGCAAAATTGGTGGAATGTTTGGACGATATTCTTCACGAATGTCCGC
AGCTATTGCAAAATACGCCCGTTCCATCATATTCTATAAATAAGACGGTAAAACCCAAAAACGACCAAACCAAACGTCTG
CAACCCAAAGCAATAGCGGATGAACCGCAAAGGCCGTCTGAAAACCCTCCTGCCGCCTCATCGACAAGCACTTTATTGGA
AGCAATGGGTTACGACCCGATACACTCCGATATTTTGGCGCAACAAACCAATACGGCGGCGGCAGACGTGTACGCACAGC
TTTTAGAATACGAACTCGACGGTATTGTTGCCGCCTTGCCGGGCGGCCGTTATCAGCGTGTCAAAGCATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(331-389)

DNA recombination-mediator protein A (DNA_processg_A)

(79-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

76.923

100

0.783
  dprA Neisseria meningitidis MC58

76.923

100

0.783
  dprA Neisseria gonorrhoeae MS11

77.33

100

0.775
  dprA Neisseria gonorrhoeae strain FA1090

76.826

100

0.77
  dprA Vibrio cholerae strain A1552

38.579

99.495

0.384
  dprA Vibrio campbellii strain DS40M4

37.468

97.727

0.366
  dprA Glaesserella parasuis strain SC1401

43.027

85.101

0.366