Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FOC66_RS07580 Genome accession   NZ_CP053939
Coordinates   1606284..1606778 (-) Length   164 a.a.
NCBI ID   WP_081456519.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601284..1611778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS07560 (FOC66_07560) xth 1601410..1602180 (+) 771 WP_003749180.1 exodeoxyribonuclease III -
  FOC66_RS07565 (FOC66_07565) - 1602335..1602883 (-) 549 WP_003749181.1 SMI1/KNR4 family protein -
  FOC66_RS07570 (FOC66_07570) - 1603206..1604012 (-) 807 WP_003749184.1 hypothetical protein -
  FOC66_RS07575 (FOC66_07575) uvrB 1604104..1606131 (-) 2028 WP_003749186.1 excinuclease ABC subunit UvrB -
  FOC66_RS07580 (FOC66_07580) comP 1606284..1606778 (-) 495 WP_081456519.1 type IV pilin protein Machinery gene
  FOC66_RS07585 (FOC66_07585) comE 1606954..1607241 (-) 288 WP_003747589.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17931.96 Da        Isoelectric Point: 10.0610

>NTDB_id=449263 FOC66_RS07580 WP_081456519.1 1606284..1606778(-) (comP) [Neisseria mucosa strain FDAARGOS_758]
MYLKAFDGKRNGATVQRGYSLVQLLVVMLLVSILAAAAFTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=449263 FOC66_RS07580 WP_081456519.1 1606284..1606778(-) (comP) [Neisseria mucosa strain FDAARGOS_758]
ATGTACTTAAAGGCATTTGACGGAAAACGGAATGGGGCAACTGTGCAGAGGGGGTATTCTTTGGTACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGGCGGCGGCCTTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CGCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGCCAGGCTAAGGGTATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAACGAGTCGTTGACGGCGG
TGGTGTGCGGGAAGATGAAAGGGAAGGGCAGTTGTACGGACGGCGAGGAGATATTTAGGGGTAATGATGCGGAGTGTAAG
CCTTTTATGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

94.512

100

0.945
  comP Neisseria meningitidis 8013

51.007

90.854

0.463
  comP Neisseria gonorrhoeae MS11

51.02

89.634

0.457