Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FOC66_RS06990 Genome accession   NZ_CP053939
Coordinates   1481145..1481768 (-) Length   207 a.a.
NCBI ID   WP_003748969.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476145..1486768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS10755 (FOC66_06970) - 1477118..1477630 (-) 513 WP_036494019.1 shikimate kinase -
  FOC66_RS06975 (FOC66_06975) pilQ 1477763..1479895 (-) 2133 WP_003748961.1 type IV pilus secretin PilQ Machinery gene
  FOC66_RS06980 (FOC66_06980) pilP 1479916..1480458 (-) 543 WP_003748964.1 pilus assembly protein PilP Machinery gene
  FOC66_RS06985 (FOC66_06985) pilO 1480474..1481145 (-) 672 WP_003748967.1 type 4a pilus biogenesis protein PilO -
  FOC66_RS06990 (FOC66_06990) pilN 1481145..1481768 (-) 624 WP_003748969.1 PilN domain-containing protein Machinery gene
  FOC66_RS06995 (FOC66_06995) pilM 1481773..1482864 (-) 1092 WP_003748971.1 type IV pilus assembly protein PilM -
  FOC66_RS07000 (FOC66_07000) - 1483017..1485413 (+) 2397 WP_036494021.1 penicillin-binding protein 1A -
  FOC66_RS07005 (FOC66_07005) - 1485474..1486310 (+) 837 WP_003748974.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23121.31 Da        Isoelectric Point: 4.7171

>NTDB_id=449262 FOC66_RS06990 WP_003748969.1 1481145..1481768(-) (pilN) [Neisseria mucosa strain FDAARGOS_758]
MIELTRINLLPYREEIKQRKQQQFKVLMFGAFAVGLGLAAATYLGIDNAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNTLTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=449262 FOC66_RS06990 WP_003748969.1 1481145..1481768(-) (pilN) [Neisseria mucosa strain FDAARGOS_758]
ATGATTGAATTAACCAGAATCAACCTTCTCCCGTATCGGGAGGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAGTATT
GATGTTTGGCGCCTTTGCAGTGGGTTTGGGCTTGGCGGCCGCAACCTATCTCGGTATTGACAACGCCATCAGTAATCAAG
AAGGGCGCAACAACTTCCTGCAAACCGAAATCGACAGACTCGATAGGGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCTAAAAAGCTGAAAGTGGAAGAATTGCAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATACGCTTACGCCCGATAATACTTATTTGACCGCGTTGGAAGCCGAAAGCCCGACCAGCTATAAAATCAGCGGCC
ATGCCATCAGCGACAATAAAATCGCTGTTATGATGCGCTCCCTGCCAAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTGAATACGCCGGCTCCTGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCCGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.853

95.169

0.541