Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FOC91_RS27950 Genome accession   NZ_CP053931
Coordinates   5145956..5146669 (-) Length   237 a.a.
NCBI ID   WP_000429324.1    Uniprot ID   -
Organism   Bacillus cereus strain FDAARGOS_797     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5140956..5151669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC91_RS27935 (FOC91_27930) deoC 5142234..5142905 (-) 672 WP_001017446.1 deoxyribose-phosphate aldolase -
  FOC91_RS27940 (FOC91_27935) - 5143212..5144159 (-) 948 WP_000356562.1 sugar-binding transcriptional regulator -
  FOC91_RS27945 (FOC91_27940) - 5144519..5145955 (-) 1437 WP_000398538.1 sensor histidine kinase KdpD -
  FOC91_RS27950 (FOC91_27945) scnR 5145956..5146669 (-) 714 WP_000429324.1 response regulator transcription factor Regulator
  FOC91_RS27955 (FOC91_27950) - 5146999..5147298 (-) 300 WP_052494346.1 YxeA family protein -
  FOC91_RS27960 (FOC91_27955) - 5147371..5148102 (-) 732 WP_000830531.1 ABC transporter permease -
  FOC91_RS27965 (FOC91_27960) - 5148115..5148867 (-) 753 WP_000593662.1 ABC transporter permease -
  FOC91_RS27970 (FOC91_27965) - 5148864..5149781 (-) 918 WP_000539072.1 ATP-binding cassette domain-containing protein -
  FOC91_RS27975 (FOC91_27970) - 5150318..5150944 (-) 627 WP_000432996.1 LysE family translocator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27115.64 Da        Isoelectric Point: 5.8194

>NTDB_id=449139 FOC91_RS27950 WP_000429324.1 5145956..5146669(-) (scnR) [Bacillus cereus strain FDAARGOS_797]
MENLKNKKILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVMLPDGDGFSLLSSIRKFSSTP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILKRVYSSSVTERLSIFRLGEQIVDLESAVVHRGQKEMPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKLLVKETY

Nucleotide


Download         Length: 714 bp        

>NTDB_id=449139 FOC91_RS27950 WP_000429324.1 5145956..5146669(-) (scnR) [Bacillus cereus strain FDAARGOS_797]
ATGGAAAATCTAAAAAACAAAAAAATATTAATTGTGGACGATGAACAAGAAATCAGAATAATGATTGAAAGATTTTTAAG
AAAAGAGGGATTTTTTCGCATTTATACTGCTGTTGACTGCGCTTCTGCTCTGTCATTTTGCCAGGTAGACAATCCAGATA
TCGTAATTCTGGATGTTATGTTACCGGATGGTGACGGATTTTCTTTACTGTCTTCCATTAGGAAGTTTTCGAGCACACCG
GTTCTTTTTCTCTCTGCGCGGGGAGAGGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACATGGTGAA
GCCATTTCTGCCACGTGAGCTGGTATTACGGCTCATGGCGATTTTGAAACGTGTATATTCTTCCTCGGTCACAGAGCGTC
TATCTATCTTTAGATTAGGAGAACAAATCGTTGATCTTGAAAGCGCTGTTGTACACAGAGGGCAGAAAGAGATGCCATTG
ACGGCAAAGGAGCATGCCATTCTTGTAAAGCTTTATGAAAATCAAGGACGTATCATTACAAATGATGCCTTATGTCAGGC
TGTTTGGGGAGATGACAGCTACGGTCTTGAGAATACTTTGATGGTTCATATCAGGCGGATACGTGAAAAGATTGAGCTGG
ATCCTTCCAAACCAATCTATCTTCTCACCTTCAGGGGATTGGGATATAAATTGCTAGTAAAGGAGACGTATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.351

97.468

0.481
  vicR Streptococcus mutans UA159

41.921

96.624

0.405
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401