Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   APA42C_RS12665 Genome accession   NC_017150
Coordinates   2692425..2692985 (+) Length   186 a.a.
NCBI ID   WP_003626515.1    Uniprot ID   A0A401X6N0
Organism   Acetobacter pasteurianus IFO 3283-01-42C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2687425..2697985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APA42C_RS12640 (APA42C_25660) - 2687560..2689128 (-) 1569 WP_014457571.1 Do family serine endopeptidase -
  APA42C_RS12645 (APA42C_25670) - 2689304..2689759 (-) 456 WP_014457572.1 nucleoside deaminase -
  APA42C_RS16420 (APA42C_25680) - 2689980..2690132 (+) 153 WP_003626506.1 hypothetical protein -
  APA42C_RS12650 (APA42C_25690) - 2690257..2690988 (+) 732 WP_003626508.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  APA42C_RS12655 (APA42C_25700) - 2690985..2691761 (+) 777 WP_014457574.1 pseudouridine synthase -
  APA42C_RS12660 (APA42C_25710) rsmD 2691761..2692345 (+) 585 WP_003626513.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  APA42C_RS12665 (APA42C_25720) ssb 2692425..2692985 (+) 561 WP_003626515.1 single-stranded DNA-binding protein Machinery gene
  APA42C_RS12670 (APA42C_25730) - 2693047..2694321 (+) 1275 WP_003626517.1 O-antigen ligase family protein -
  APA42C_RS12675 (APA42C_25740) dksA 2694537..2694950 (+) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  APA42C_RS16425 - 2695192..2695725 (+) 534 WP_173328354.1 hypothetical protein -
  APA42C_RS16430 (APA42C_25760) - 2695652..2696452 (+) 801 WP_250698422.1 tyrosine-type recombinase/integrase -
  APA42C_RS12690 (APA42C_25770) - 2696537..2697160 (-) 624 WP_014457576.1 hypothetical protein -
  APA42C_RS12695 (APA42C_25780) - 2697154..2697732 (-) 579 WP_014457577.1 recombinase family protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19838.50 Da        Isoelectric Point: 5.3755

>NTDB_id=44907 APA42C_RS12665 WP_003626515.1 2692425..2692985(+) (ssb) [Acetobacter pasteurianus IFO 3283-01-42C]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSSEGEGEGGGFGGGSGSSYGGYNSGGGGGYGAPSSAPRQQPA
QRSGGNNSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=44907 APA42C_RS12665 WP_003626515.1 2692425..2692985(+) (ssb) [Acetobacter pasteurianus IFO 3283-01-42C]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCCACCAGCGACACATGGAATGACCGCGCATCTGGTGAACGACGTGAACGCACAGAAT
GGCATCGCGTGGTTATTTTCAACGAACGTCTGGCAGATGTGGCCGAACGCTTCTTGCGCAAAGGCCGCAAGGTTTATCTG
GAAGGCTCCCTGCAGACCAGAAAATGGACAGATCAGGGTGGGCAGGAACGCTACACGACGGAAGTGATTATCGACCGTTT
CCGTGGTGAACTGGTGCTGCTGGATAGCCGCAATAGTAGCGAAGGCGAAGGTGAAGGCGGCGGCTTTGGTGGCGGAAGCG
GCAGCAGCTACGGCGGCTATAACAGTGGTGGCGGCGGTGGTTATGGCGCCCCATCATCCGCACCACGCCAGCAACCAGCA
CAGCGCAGCGGTGGCAATAACTCCGGCGGCTGGGATGCATCTGGCGGCAACGGAGATCTTGATGACGAAATTCCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A401X6N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.475

100

0.505
  ssb Vibrio cholerae strain A1552

44.565

98.925

0.441
  ssb Neisseria meningitidis MC58

38.798

98.387

0.382
  ssb Neisseria gonorrhoeae MS11

38.251

98.387

0.376

Multiple sequence alignment