Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   STCNRZ887_RS07900 Genome accession   NZ_CP065491
Coordinates   1544709..1545227 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   Q5M2Q4
Organism   Streptococcus thermophilus strain CNRZ887     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1539709..1550227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ887_RS07880 (STCNRZ887_07890) - 1541617..1542561 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  STCNRZ887_RS07885 (STCNRZ887_07895) - 1542632..1543303 (+) 672 WP_011226546.1 DUF1129 domain-containing protein -
  STCNRZ887_RS07890 (STCNRZ887_07900) - 1543420..1544301 (+) 882 WP_011226547.1 DUF4300 family protein -
  STCNRZ887_RS07895 (STCNRZ887_07905) rpsR 1544428..1544667 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  STCNRZ887_RS07900 (STCNRZ887_07910) ssb 1544709..1545227 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  STCNRZ887_RS07905 (STCNRZ887_07915) rpsF 1545239..1545529 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  STCNRZ887_RS07910 - 1545748..1546080 (+) 333 WP_011226548.1 hypothetical protein -
  STCNRZ887_RS07915 - 1546241..1546702 (+) 462 WP_231108733.1 hypothetical protein -
  STCNRZ887_RS07920 (STCNRZ887_07925) mutY 1547367..1548518 (+) 1152 WP_011226550.1 A/G-specific adenine glycosylase -
  STCNRZ887_RS07925 (STCNRZ887_07930) - 1548845..1549096 (-) 252 WP_011226551.1 hypothetical protein -
  STCNRZ887_RS07930 (STCNRZ887_07935) - 1549199..1549411 (-) 213 WP_011226552.1 hypothetical protein -
  STCNRZ887_RS07935 (STCNRZ887_07940) - 1549414..1549728 (-) 315 WP_232085769.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=448872 STCNRZ887_RS07900 WP_002951905.1 1544709..1545227(-) (ssb) [Streptococcus thermophilus strain CNRZ887]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=448872 STCNRZ887_RS07900 WP_002951905.1 1544709..1545227(-) (ssb) [Streptococcus thermophilus strain CNRZ887]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTAGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366