Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   STCNRZ887_RS07760 Genome accession   NZ_CP065491
Coordinates   1517286..1519304 (-) Length   672 a.a.
NCBI ID   WP_011226529.1    Uniprot ID   Q5M2S8
Organism   Streptococcus thermophilus strain CNRZ887     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1512286..1524304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ887_RS07740 (STCNRZ887_07755) - 1512766..1512906 (-) 141 WP_167540730.1 hypothetical protein -
  STCNRZ887_RS07745 (STCNRZ887_07760) - 1512951..1513976 (-) 1026 WP_311316641.1 DUF6574 domain-containing protein -
  STCNRZ887_RS07750 (STCNRZ887_07765) - 1514093..1515478 (-) 1386 WP_011226527.1 Cof-type HAD-IIB family hydrolase -
  STCNRZ887_RS07755 (STCNRZ887_07770) - 1515552..1516517 (+) 966 WP_041827163.1 asparaginase -
  STCNRZ887_RS07760 (STCNRZ887_07775) recG/mmsA 1517286..1519304 (-) 2019 WP_011226529.1 ATP-dependent DNA helicase RecG Machinery gene
  STCNRZ887_RS07765 (STCNRZ887_07780) alr 1519433..1520536 (-) 1104 WP_011226530.1 alanine racemase -
  STCNRZ887_RS07770 (STCNRZ887_07785) acpS 1520557..1520916 (-) 360 WP_002951878.1 holo-ACP synthase -
  STCNRZ887_RS07775 (STCNRZ887_07790) - 1520920..1521951 (-) 1032 WP_011226531.1 3-deoxy-7-phosphoheptulonate synthase -
  STCNRZ887_RS07780 (STCNRZ887_07795) - 1522049..1523080 (-) 1032 WP_011226532.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75621.18 Da        Isoelectric Point: 6.2978

>NTDB_id=448869 STCNRZ887_RS07760 WP_011226529.1 1517286..1519304(-) (recG/mmsA) [Streptococcus thermophilus strain CNRZ887]
MIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAINFFNQPYLVDKFEVGAEVAIFGKWDRKKSAVTGMKVLAHVEDDMQPVYHVAQGVSQAQLIKAIKVAF
DSGALNLLEESLPQVLMDKYRLMGRQEAVRVMHFPKDLAEYKQALRRIKFEELFYFQMNLQVLKAENKSETNGLAISYDE
VKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQ
SLKGLFPELKVVLLTSGMKMADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDAQVYFISPLIEESESLDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPDWQVLEAHLRNQDEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=448869 STCNRZ887_RS07760 WP_011226529.1 1517286..1519304(-) (recG/mmsA) [Streptococcus thermophilus strain CNRZ887]
ATGATTCAACTAGATTCACCAATTGCAGATTTGAAGGGCTTTGGTCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ACACACAGTTGGGGACCTCTTGCTTTATTTTCCTTTTCGATATGAAGATTTTAAGAGTAAGTCCATCTTTGAACTGATGG
ATGGAGAAAAGGCCGTCATTACAGGAACGGTGGTGACACCTGCCAATGTGCAGTATTATGGCTTTAAACGTAATCGTCTT
AGCTTTAAAATAAAGCAGGGTGAGGCTGTGATTGCCATTAATTTCTTTAATCAGCCTTATCTTGTGGACAAGTTTGAGGT
GGGGGCAGAAGTGGCTATCTTTGGCAAGTGGGACCGTAAGAAGTCTGCAGTGACTGGTATGAAAGTCTTGGCTCATGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCTCAGGGTGTTAGTCAGGCCCAGCTGATAAAGGCTATAAAGGTAGCTTTT
GACAGTGGCGCCCTTAATTTGTTGGAGGAAAGTCTCCCCCAAGTGCTGATGGACAAGTATCGTCTCATGGGACGTCAAGA
GGCTGTGCGTGTCATGCATTTTCCTAAAGATTTGGCTGAATATAAGCAGGCCCTACGTAGGATTAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTAAAGGCTGAGAATAAATCAGAGACCAATGGACTAGCGATTTCTTACGATGAG
GTAAAAATAAAAGCCAAGATTGCTACCCTTCCTTTCCCTCTGACCAAAGCCCAGGAGCGCAGTTTATCAGAAATCCTAGC
TGATATGAAATCTGGGGCTCACATGAACCGTCTCTTGCAGGGAGACGTGGGCTCAGGAAAGACAGTTATTGCTAGTCTTG
CCATGTATGGGGCTTATACGGCAGGATTGCAGTCTGCCCTTATGGTGCCGACGGAAATATTAGCAGAGCAGCATTATCAG
AGTTTGAAGGGACTTTTTCCTGAGCTAAAGGTAGTCCTCTTAACTTCTGGGATGAAGATGGCAGATAAGAAAGTAGCTCT
TTCTAAAATTGAGTCTGGGGAGGCTCAAATGATTGTGGGAACTCACTCACTGATTCAGGATGCGGTGATTTATCATAAAC
TTGGGTTGGTGATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGAGAGAAGGGAGACAATCCT
GATGTCCTCATGATGACAGCAACACCCATTCCTAGGACCTTGGCAATCACTGCCTTTGGGGAGATGGATGTGTCAATCAT
TGATCAGATGCCGGCTGGACGTAAGACTATTATTACCCGTTGGGTTAAACATGAGCAACTAGACACCGTATTGACTTGGA
TTAAGAGTGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTTTGATTGAAGAGTCTGAGTCTCTTGATTTGAAA
AATGCTGTTGCCCTTCATCAGGAACTCACAGAGTTTTTTGGAGATTCAGCTACGGTGGCTCTGATGCATGGTCGGATGAA
AAATGATGAAAAAGACCAAATTATGCAGGATTTTAAGGACAAAAAATCTCAGATTTTAGTATCAACCACAGTTATTGAAG
TTGGAGTTAACGTACCTAATGCTACGGTTATGGTTATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGCCGTGTAGGGCGTGGAGACAAGCAGTCTTACTGTGTCTTGGTGGCTAATCCTAAAAATGATACCGGTAAAAAACG
CATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTTTAGCAGAAGAGGACCTTAAAATGCGTGGCTCAGGAGAGATTT
TCGGGACGCGGCAGTCAGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGACTATAATATCCTAGAAGAAGCAAGG
CGCGTGGCCAGTCAAATTGTTTCTGACCCTAACTGGCGTGAGAATCCTGATTGGCAGGTGCTAGAAGCTCATTTGAGAAA
CCAAGATGAGTTTGACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(255-412)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

Helicase conserved C-terminal domain (Helicase_C)

(457-567)

RecG wedge domain (RecG_wedge)

(11-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.088

99.851

0.71
  recG/mmsA Streptococcus pneumoniae R36A

71.088

99.851

0.71
  recG Bacillus subtilis subsp. subtilis str. 168

50

99.107

0.496
  recG Neisseria meningitidis strain C311

39.079

100

0.391