Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   STCNRZ1575_RS08380 Genome accession   NZ_CP065490
Coordinates   1616857..1617375 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   Q5M2Q4
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1611857..1622375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS08360 (STCNRZ1575_08325) - 1613766..1614710 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  STCNRZ1575_RS08365 (STCNRZ1575_08330) - 1614781..1615452 (+) 672 WP_064356092.1 DUF1129 domain-containing protein -
  STCNRZ1575_RS08370 (STCNRZ1575_08335) - 1615569..1616450 (+) 882 WP_064356095.1 DUF4300 family protein -
  STCNRZ1575_RS08375 (STCNRZ1575_08340) rpsR 1616576..1616815 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  STCNRZ1575_RS08380 (STCNRZ1575_08345) ssb 1616857..1617375 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  STCNRZ1575_RS08385 (STCNRZ1575_08350) rpsF 1617387..1617677 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  STCNRZ1575_RS08390 (STCNRZ1575_08355) - 1617896..1618849 (+) 954 WP_173940657.1 hypothetical protein -
  STCNRZ1575_RS08395 (STCNRZ1575_08360) mutY 1619515..1620666 (+) 1152 WP_134973490.1 A/G-specific adenine glycosylase -
  STCNRZ1575_RS08400 (STCNRZ1575_08365) - 1620993..1621244 (-) 252 WP_024010075.1 hypothetical protein -
  STCNRZ1575_RS08405 (STCNRZ1575_08370) - 1621347..1621574 (-) 228 WP_011681629.1 hypothetical protein -
  STCNRZ1575_RS08410 (STCNRZ1575_08375) - 1621561..1621737 (-) 177 WP_011681630.1 hypothetical protein -
  STCNRZ1575_RS08415 (STCNRZ1575_08380) - 1621738..1622022 (-) 285 WP_260214209.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=448770 STCNRZ1575_RS08380 WP_002951905.1 1616857..1617375(-) (ssb) [Streptococcus thermophilus strain CNRZ1575]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=448770 STCNRZ1575_RS08380 WP_002951905.1 1616857..1617375(-) (ssb) [Streptococcus thermophilus strain CNRZ1575]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATCACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366