Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   STAVA1121_RS08245 Genome accession   NZ_CP065488
Coordinates   1568879..1570897 (-) Length   672 a.a.
NCBI ID   WP_347131222.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1563879..1575897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS08230 (STAVA1121_08120) - 1563995..1565380 (-) 1386 WP_011226527.1 Cof-type HAD-IIB family hydrolase -
  STAVA1121_RS08235 (STAVA1121_08125) - 1565454..1566419 (+) 966 WP_084829972.1 asparaginase -
  STAVA1121_RS08245 (STAVA1121_08135) recG/mmsA 1568879..1570897 (-) 2019 WP_347131222.1 ATP-dependent DNA helicase RecG Machinery gene
  STAVA1121_RS08250 (STAVA1121_08140) alr 1571025..1572128 (-) 1104 WP_347131223.1 alanine racemase -
  STAVA1121_RS08255 (STAVA1121_08145) acpS 1572149..1572508 (-) 360 WP_002951878.1 holo-ACP synthase -
  STAVA1121_RS08260 (STAVA1121_08150) - 1572512..1573543 (-) 1032 WP_011226531.1 3-deoxy-7-phosphoheptulonate synthase -
  STAVA1121_RS08265 (STAVA1121_08155) - 1573641..1574672 (-) 1032 WP_011226532.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75571.09 Da        Isoelectric Point: 6.2976

>NTDB_id=448566 STAVA1121_RS08245 WP_347131222.1 1568879..1570897(-) (recG/mmsA) [Streptococcus thermophilus strain AVA1121]
MIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAINFFNQPYLVDKFEVGAEVAIFGKWDRKKSAVTGMKVLAHVEDDMQPVYHVAQGVSQAQLIKAIKVAF
DSGALNLLEESLPQVLMDKYRLIGRQEAVRVMHFPKDLAEYKQALRRIKFEELFYFQMNLQVLKAENKSETNGLAISYDE
VKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQ
SLKGLFPELKVVLLTSGMKMADKKVALSKIESGEAQIIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDAQVYFISPLIEESESLDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRDNPDWQVLEAHLRNQDEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=448566 STAVA1121_RS08245 WP_347131222.1 1568879..1570897(-) (recG/mmsA) [Streptococcus thermophilus strain AVA1121]
ATGATTCAACTAGATTCACCAATTGCAGATTTGAAGGGCTTTGGTCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ACACACAGTTGGGGACCTCTTGCTTTATTTTCCTTTTCGATATGAAGATTTTAAGAGTAAGTCCATCTTTGAACTGATGG
ATGGAGAAAAGGCCGTCATTACAGGAACAGTGGTAACACCGGCCAATGTGCAGTATTATGGCTTTAAACGTAATCGTCTT
AGCTTTAAAATAAAGCAGGGTGAGGCTGTGATTGCCATTAATTTCTTTAATCAGCCTTATCTTGTGGACAAGTTTGAGGT
GGGGGCAGAAGTGGCTATCTTTGGCAAGTGGGACCGTAAGAAGTCTGCAGTGACTGGTATGAAAGTCTTGGCTCATGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCTCAGGGTGTTAGTCAGGCCCAGCTGATAAAGGCTATAAAGGTAGCTTTT
GACAGTGGCGCCCTTAATTTGTTGGAGGAAAGTCTCCCCCAAGTGCTGATGGACAAGTATCGTCTCATAGGACGTCAAGA
GGCTGTGCGTGTCATGCATTTTCCTAAAGATTTGGCTGAATATAAGCAGGCCCTACGTAGGATTAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTAAAGGCTGAGAATAAATCAGAGACCAATGGACTAGCGATTTCTTACGATGAG
GTAAAAATAAAAGCCAAGATTGCTACCCTTCCTTTCCCTCTGACCAAAGCCCAGGAGCGCAGTTTATCAGAAATCCTAGC
TGATATGAAATCTGGGGCTCACATGAACCGTCTCTTGCAGGGAGACGTGGGCTCAGGAAAGACAGTTATTGCTAGTCTTG
CCATGTATGGGGCTTATACGGCAGGATTGCAGTCTGCCCTTATGGTGCCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTGAAGGGACTTTTTCCTGAGCTAAAGGTAGTCCTCTTAACTTCTGGGATGAAGATGGCAGATAAGAAAGTAGCTCT
TTCTAAAATTGAGTCTGGGGAGGCTCAAATTATTGTGGGAACTCACTCACTGATTCAGGATGCGGTGATTTATCATAAAC
TTGGGTTGGTGATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGAGAGAAGGGAGACAATCCT
GATGTCCTCATGATGACAGCAACACCCATTCCTAGGACCTTGGCAATCACTGCCTTTGGGGAGATGGATGTGTCAATCAT
TGATCAGATGCCGGCTGGACGTAAGACTATTATTACCCGTTGGGTTAAACATGAGCAACTAGACACCGTATTGACTTGGA
TTAAGAGTGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTTTGATTGAAGAGTCTGAGTCTCTTGATTTGAAA
AATGCTGTTGCCCTTCATCAGGAACTCACAGAGTTTTTTGGAGATTCAGCTACGGTGGCTCTGATGCATGGTCGGATGAA
AAATGATGAAAAAGACCAAATTATGCAGGATTTTAAGGACAAAAAATCTCAGATTTTAGTATCAACCACAGTTATTGAAG
TTGGAGTTAACGTACCTAATGCTACGGTTATGGTTATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGCCGTGTAGGGCGTGGAGACAAGCAGTCTTACTGTGTCTTGGTGGCTAATCCTAAAAATGATACCGGTAAAAAACG
CATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTTTAGCAGAAGAGGACCTTAAAATGCGTGGCTCAGGAGAGATTT
TCGGGACGCGGCAGTCAGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGACTATAATATCCTAGAAGAAGCAAGG
CGCGTGGCCAGTCAAATTGTTTCTGACCCTAACTGGCGTGATAATCCTGATTGGCAGGTGCTAGAAGCTCATTTGAGAAA
CCAAGATGAGTTTGACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(457-567)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

DEAD/DEAH box helicase (DEAD)

(255-412)

RecG wedge domain (RecG_wedge)

(11-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.79

99.851

0.707
  recG/mmsA Streptococcus pneumoniae R36A

70.79

99.851

0.707
  recG Bacillus subtilis subsp. subtilis str. 168

50

99.107

0.496
  recG Neisseria meningitidis strain C311

39.227

100

0.393