Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   STAVA1121_RS00350 Genome accession   NZ_CP065488
Coordinates   60662..61252 (+) Length   196 a.a.
NCBI ID   WP_002949053.1    Uniprot ID   Q5M6H5
Organism   Streptococcus thermophilus strain AVA1121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55662..66252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS00325 (STAVA1121_00320) - 56792..57247 (-) 456 Protein_43 DUF3021 domain-containing protein -
  STAVA1121_RS00330 (STAVA1121_00325) - 57244..57637 (-) 394 Protein_44 LytTR family DNA-binding domain-containing protein -
  STAVA1121_RS00335 (STAVA1121_00330) - 57861..58166 (+) 306 WP_347131308.1 hypothetical protein -
  STAVA1121_RS00340 (STAVA1121_00335) mutL 58218..60160 (+) 1943 Protein_46 DNA mismatch repair endonuclease MutL -
  STAVA1121_RS00345 - 60290..60510 (+) 221 Protein_47 hypothetical protein -
  STAVA1121_RS00350 (STAVA1121_00340) ruvA 60662..61252 (+) 591 WP_002949053.1 Holliday junction branch migration protein RuvA Machinery gene
  STAVA1121_RS00355 (STAVA1121_00345) - 61259..61813 (+) 555 Protein_49 DNA-3-methyladenine glycosylase I -
  STAVA1121_RS00360 (STAVA1121_00350) cinA 61909..63180 (+) 1272 WP_347131309.1 competence/damage-inducible protein A Machinery gene
  STAVA1121_RS00365 (STAVA1121_00355) recA 63216..64355 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  STAVA1121_RS00370 (STAVA1121_00360) spx 64532..64929 (+) 398 Protein_52 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21699.98 Da        Isoelectric Point: 5.2834

>NTDB_id=448486 STAVA1121_RS00350 WP_002949053.1 60662..61252(+) (ruvA) [Streptococcus thermophilus strain AVA1121]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKSTELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=448486 STAVA1121_RS00350 WP_002949053.1 60662..61252(+) (ruvA) [Streptococcus thermophilus strain AVA1121]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAATCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66

100

0.673
  ruvA Streptococcus pneumoniae R6

66

100

0.673
  ruvA Streptococcus pneumoniae D39

66

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444