Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BMWSH_RS00735 Genome accession   NC_017138
Coordinates   148936..149298 (+) Length   120 a.a.
NCBI ID   WP_014457774.1    Uniprot ID   A0A8D3WU46
Organism   Priestia megaterium WSH-002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 143936..154298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMWSH_RS00700 (BMWSH_0138) - 144131..145132 (+) 1002 WP_013059791.1 rod shape-determining protein -
  BMWSH_RS00705 (BMWSH_0139) - 145243..146067 (+) 825 WP_014457769.1 flagellar hook-basal body protein -
  BMWSH_RS00710 (BMWSH_0140) - 146091..146912 (+) 822 WP_014457770.1 flagellar hook-basal body protein -
  BMWSH_RS00715 (BMWSH_0141) fabZ 146996..147436 (+) 441 WP_014457771.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BMWSH_RS00720 (BMWSH_0142) - 147457..147879 (-) 423 WP_014457772.1 helix-turn-helix domain-containing protein -
  BMWSH_RS00730 (BMWSH_0143) - 148402..148839 (-) 438 WP_014457773.1 YwpF-like family protein -
  BMWSH_RS00735 (BMWSH_0144) ssbB 148936..149298 (+) 363 WP_014457774.1 single-stranded DNA-binding protein Machinery gene
  BMWSH_RS00740 (BMWSH_0145) - 149835..150881 (-) 1047 WP_014457775.1 LysM peptidoglycan-binding domain-containing protein -
  BMWSH_RS00745 (BMWSH_0146) - 151179..153809 (-) 2631 WP_014457776.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=44847 BMWSH_RS00735 WP_014457774.1 148936..149298(+) (ssbB) [Priestia megaterium WSH-002]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=44847 BMWSH_RS00735 WP_014457774.1 148936..149298(+) (ssbB) [Priestia megaterium WSH-002]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTCTTCTTCATTTGATTCAAATCAGCAAGAAGAATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508

Multiple sequence alignment