Detailed information NTG0448125

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CORN_RS01990
• Genome accession: NZ_CP053848
• Coordinates: 374141..375532 (+)
• Length: 463 a.a.
• NCBI ID: WP_066007097.1
• Uniprot ID: -
• Organism: Campylobacter ornithocola strain LMG 29815
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 369141..380532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CORN_RS01975 (CORN_0393)	-	369523..370167 (+)	645	WP_066007106.1	HAD family hydrolase	-
CORN_RS01980 (CORN_0394)	nifJ	370285..373839 (+)	3555	WP_066007104.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CORN_RS01985 (CORN_0395)	-	373843..374169 (+)	327	WP_066007099.1	hypothetical protein	-
CORN_RS01990 (CORN_0396)	ctsD	374141..375532 (+)	1392	WP_066007097.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CORN_RS01995 (CORN_0397)	-	375513..375842 (+)	330	WP_066007095.1	CDC27 family protein	-
CORN_RS02000 (CORN_0398)	-	375844..377349 (+)	1506	WP_245162279.1	GspE/PulE family protein	-
CORN_RS02005 (CORN_0399)	-	377346..378506 (+)	1161	WP_066007091.1	type II secretion system F family protein	-
CORN_RS02010 (CORN_0400)	-	378503..379255 (-)	753	WP_066007089.1	TSUP family transporter	-
CORN_RS02015 (CORN_0401)	-	379240..379989 (-)	750	WP_066007088.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52563.48 Da
• Isoelectric Point: 9.0098

>NTDB_id=448125 CORN_RS01990 WP_066007097.1 374141..375532(+) (ctsD) [Campylobacter ornithocola strain LMG 29815]
MKKIIFLFVSFLAFTNVFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDALAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAFEYDKNILKIYGRQVKTFKIHYISSIREGQSITKASVDSRPKQGDYDNTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELALKLNG
DDNDFIINKGGVRNINLKANIETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHSEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFKHENDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=448125 CORN_RS01990 WP_066007097.1 374141..375532(+) (ctsD) [Campylobacter ornithocola strain LMG 29815]
ATGAAAAAAATAATATTTTTATTCGTTAGTTTTTTAGCTTTTACAAATGTTTTTGCCTCGCAGTGCCATCAGCGCTTTTT
TGATATAAGTGTAGAAAACAAAACTTCTTTGATTGAAATTTTAAATGAGCTTGGTAGAGAATGTGGTTTTAGTATAATTA
TAAAAGATGCTCTTGCTAGGGAAAAATTAAATCATACGCAAAATTATTTACATATAAGAAAAATGTCTTTAAGGGAAATT
TTTAAACTTTTGTTAATGGAAAATAATCTTGCTTTTGAATATGATAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAATTCATTATATAAGCTCTATCAGGGAAGGACAAAGTATTACTAAAGCTTCGGTAGATTCAAGACCTAAAC
AAGGAGATTATGATAATACCAAAGAAGCAGATAATTTAGTTATTAGTACAGATAAATTTGACTTTTGGGAAAAAATTTCA
GAAGAAATTCAAGCTTTACTTGATGAAAATACGACTAAACCTATTATCAATACCAATGCAGGAATTATTACTTTAAATGC
TACTTTGTATGAGCTTACAAGAGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAACAAGTTTTAATTGATG
TAAGTATAGTTGCAGTGCATTTAAATAAAAGTCATTCAAGTGGGATTAATTGGCAAGAGCTTGCTTTGAAGCTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTGTTAGAAATATCAATCTGAAAGCTAATATTGAAACTAAGGCTATTTT
AAATTTACTGCAAGAAAATGGCAAAACGACTGTACTTTCTAATCCAAAGCTAATGGCACTTAATAATCAACAAGCTATCA
TTTCTATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAAGGCACCGAAAATGGTACGACCATTAGTGAAACT
TATAACAATTATTCTATTTTTGTAGGAATTTTGCTTAATATTTTACCAGAAATTTCAGATGATCATAAAATTATGCTTAG
AATTAATCCGAGTTTGAGTGATTTTAAATATAGCGTTGATAATCATAGGCAAAATAAGCCAAGAAATATAGCACCTGATA
CCATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGGCAGACTTTAATTTTAGGTGGATTGATTAGTAAAAAT
ACGATTAGCAATCACAGCGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGTGCCTTGTTTCAAGGAAAGCAAAATTT
AGAAGATATTAGTGAAATAGTTTTTATAATTAAACCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTAAACATGAAAATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.476	100	0.575