Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CORN_RS04235 Genome accession   NZ_CP053848
Coordinates   803582..804550 (-) Length   322 a.a.
NCBI ID   WP_280642211.1    Uniprot ID   -
Organism   Campylobacter ornithocola strain LMG 29815     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 798582..809550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CORN_RS04215 (CORN_0835) - 798830..800896 (-) 2067 WP_066007958.1 TonB-dependent receptor -
  CORN_RS04220 (CORN_0836) - 800893..801822 (-) 930 WP_066007960.1 siderophore ABC transporter substrate-binding protein -
  CORN_RS04225 (CORN_0837) - 801896..802657 (-) 762 WP_066007962.1 ATP-binding cassette domain-containing protein -
  CORN_RS04230 (CORN_0838) - 802654..803589 (-) 936 WP_066007964.1 iron chelate uptake ABC transporter family permease subunit -
  CORN_RS04235 (CORN_0839) ceuB 803582..804550 (-) 969 WP_280642211.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  CORN_RS04240 (CORN_0840) flgA 804771..805439 (+) 669 WP_094750302.1 flagellar basal body P-ring formation chaperone FlgA -
  CORN_RS04245 (CORN_0841) - 805436..806020 (+) 585 WP_066007971.1 UbiX family flavin prenyltransferase -
  CORN_RS04250 (CORN_0842) coaD 806013..806492 (+) 480 WP_066007978.1 pantetheine-phosphate adenylyltransferase -
  CORN_RS04255 (CORN_0843) tmk 806483..807067 (+) 585 WP_066007980.1 dTMP kinase -
  CORN_RS04260 (CORN_0844) hisS 807060..808286 (+) 1227 WP_066007982.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35940.83 Da        Isoelectric Point: 9.2846

>NTDB_id=448127 CORN_RS04235 WP_280642211.1 803582..804550(-) (ceuB) [Campylobacter ornithocola strain LMG 29815]
MMIKYFFRLNLLIPMLIFLSLVSLFIGVKDISMFNIMSLTQEEMEILTIVRLPRLISIIITGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILICMLFFSGFNFIYQIFIAFIFTLIGSVIFIQILQKIKLKEIVFVPLVGLMFGGVINSITTFFA
YENNMIQNIQGWLQGNFSSIMIGNYEILFISIPIFIIAYFFANKITIVGMGKDVSLNLGVSYNTILYIGLIIVSIVVSIV
VLTIGVIPFLGLVIPNIVSIYKGDNLKAVLFYTAILGAAFLLVCDILSRTIIHPFEIPINLTVGIIGGVLFVWILLRKKT
NA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=448127 CORN_RS04235 WP_280642211.1 803582..804550(-) (ceuB) [Campylobacter ornithocola strain LMG 29815]
ATTATGATTAAATATTTTTTTAGACTTAATCTTTTAATACCTATGCTAATATTTCTTTCTTTAGTTAGTCTTTTTATAGG
TGTTAAAGACATTTCTATGTTTAATATCATGTCTCTAACTCAAGAAGAAATGGAAATTTTGACAATTGTTAGACTGCCAA
GATTAATTTCTATTATCATTACAGGTATGAGTTTGAGTATATGTGGTTTGATTATGCAGCAACTTACTCAAAATAAATTT
GTATCTCCTACAACTGCTGGAACAATGGATTGTGCTAAATTTGGAATTTTAATTTGTATGTTGTTTTTTAGTGGATTTAA
TTTTATTTATCAAATTTTTATAGCTTTTATTTTTACTCTTATTGGTAGTGTTATTTTTATCCAAATACTTCAAAAAATAA
AGCTAAAAGAAATTGTTTTTGTTCCTTTAGTTGGGTTAATGTTTGGGGGTGTCATTAACTCTATTACAACTTTTTTTGCT
TATGAAAACAATATGATACAAAATATTCAAGGCTGGTTGCAAGGTAATTTTTCATCTATTATGATAGGAAATTATGAAAT
ATTATTTATAAGTATTCCTATTTTTATCATTGCTTATTTTTTTGCTAATAAAATCACTATTGTTGGTATGGGTAAGGATG
TTTCTTTAAATTTAGGTGTTTCATATAATACTATTTTATATATAGGGTTAATCATAGTTTCTATTGTAGTTTCTATTGTA
GTTTTAACAATAGGAGTGATACCTTTTTTAGGTCTTGTTATACCAAATATAGTTTCAATATATAAAGGTGATAATTTAAA
AGCCGTCCTTTTTTATACTGCAATACTTGGGGCTGCGTTTTTACTGGTATGTGATATTTTATCAAGAACTATTATCCATC
CATTTGAAATCCCTATAAATTTAACTGTTGGTATTATTGGAGGTGTTTTATTTGTTTGGATTTTACTAAGAAAGAAAACA
AATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(16-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

61.491

100

0.615