Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CORN_RS05060 Genome accession   NZ_CP053848
Coordinates   978760..979416 (+) Length   218 a.a.
NCBI ID   WP_066006467.1    Uniprot ID   A0A6M8N353
Organism   Campylobacter ornithocola strain LMG 29815     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 973760..984416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CORN_RS05035 (CORN_0992) - 973863..975383 (-) 1521 WP_066006475.1 inorganic phosphate transporter -
  CORN_RS05040 (CORN_0993) pdxA 975430..976530 (-) 1101 WP_066006474.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CORN_RS05045 (CORN_0994) - 976527..977294 (-) 768 WP_066006473.1 pyridoxine 5'-phosphate synthase -
  CORN_RS05050 (CORN_0995) - 977350..978309 (+) 960 WP_066006471.1 exopolyphosphatase -
  CORN_RS05055 (CORN_0996) - 978320..978763 (+) 444 WP_066006468.1 GatB/YqeY domain-containing protein -
  CORN_RS05060 (CORN_0997) CJE0566 978760..979416 (+) 657 WP_066006467.1 DNA/RNA non-specific endonuclease Regulator
  CORN_RS05065 - 979593..980846 (+) 1254 WP_066006466.1 filamentous hemagglutinin N-terminal domain-containing protein -
  CORN_RS05070 - 980879..982537 (+) 1659 WP_172663983.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 26199.16 Da        Isoelectric Point: 9.7745

>NTDB_id=448128 CORN_RS05060 WP_066006467.1 978760..979416(+) (CJE0566) [Campylobacter ornithocola strain LMG 29815]
MKKILTLCALALSSFAYTQYELHPSFKEYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPKFSEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATTQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPNFYVKILKTKNFSECYKVPNNDNFARFDRNYFKEDCRKYIKY

Nucleotide


Download         Length: 657 bp        

>NTDB_id=448128 CORN_RS05060 WP_066006467.1 978760..979416(+) (CJE0566) [Campylobacter ornithocola strain LMG 29815]
ATGAAAAAAATTCTAACACTTTGTGCTTTAGCTTTAAGTTCTTTTGCCTATACTCAATATGAACTACACCCTAGCTTTAA
AGAGTATTTTAAAGATTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGAACTA
AGGCTATTGCTTATAAATTAGAAGCTAAAATTTTAAACCAAGGACACATTAAAAAACGCCCAAAATTTTCAGAAGATACT
AACATACCTAAAAAGTATAGAACTTATTGGGAAGATTATCTAAGAAGTGGCTATACAAGAGGACATGTCGTGCCAAATCA
ATCCATGAATGCAACCACACAAGCCCAACTTAGCACTTTTTTAATGAGCAATATCACTCCGCAAAAAAAAGATATCAATG
CTGAAATTTGGAATGAAATCGAGCAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAACTAGAAGTCTTAAATTTAGTG
CTTTATGATGATAAACCAAAACGCATTAAAAACAACATTGCTATACCTAATTTTTATGTAAAAATACTCAAAACTAAAAA
TTTTAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTCAAAGAAGATTGTAGAA
AATATATCAAATACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8N353

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

99.541

0.587
  CJE1441 Campylobacter jejuni RM1221

62.189

92.202

0.573