Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CGEO_RS03470 Genome accession   NZ_CP053844
Coordinates   749155..749928 (-) Length   257 a.a.
NCBI ID   WP_075540101.1    Uniprot ID   A0A128EDZ1
Organism   Campylobacter geochelonis strain LMG 29375     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 744155..754928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGEO_RS03460 (CGEO_0689) - 747926..748243 (+) 318 WP_172658067.1 hypothetical protein -
  CGEO_RS03465 (CGEO_0690) dprB 748734..749117 (-) 384 WP_075493391.1 Holliday junction resolvase RuvX Machinery gene
  CGEO_RS03470 (CGEO_0691) dprA 749155..749928 (-) 774 WP_075540101.1 DNA-processing protein DprA Machinery gene
  CGEO_RS03475 (CGEO_0692) - 749912..750988 (-) 1077 WP_075540102.1 divergent polysaccharide deacetylase family protein -
  CGEO_RS03480 (CGEO_0693) ilvC 751003..752025 (-) 1023 WP_075493388.1 ketol-acid reductoisomerase -
  CGEO_RS03485 (CGEO_0694) - 752126..754054 (+) 1929 WP_075540103.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28372.59 Da        Isoelectric Point: 5.4292

>NTDB_id=448103 CGEO_RS03470 WP_075540101.1 749155..749928(-) (dprA) [Campylobacter geochelonis strain LMG 29375]
MNTIDDISFLTKLKKPPKKLYYKGNLELLNMPKVSIVGSRKMSVYTKNLVLSLSSALAKRGVCVVSGAAIGVDITAHNAA
YPNTIAVFGNGLDIIYPASNAKIISQIYQNSLALSEYEPDTPAMGFRFLERNRIVVGLSQALVVAQADFRSGSLQSARLA
REMGVPVYVLPQRINESMGTNELLGKNLANLIYDVDEFAKNFSQIDQASQINEDNEVVKFIKENDSFDEVYANFGDLIYE
YELDGKVEILGTKVVIK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=448103 CGEO_RS03470 WP_075540101.1 749155..749928(-) (dprA) [Campylobacter geochelonis strain LMG 29375]
ATGAATACTATCGATGATATTTCGTTTTTAACCAAACTTAAAAAACCGCCTAAAAAGCTTTATTATAAAGGAAATTTAGA
GCTTTTAAATATGCCAAAAGTTTCCATTGTCGGCTCAAGAAAGATGAGCGTGTATACTAAAAACTTAGTTTTATCACTCT
CTAGCGCACTTGCAAAACGTGGAGTTTGTGTTGTAAGTGGGGCTGCTATTGGAGTTGATATCACAGCACACAACGCGGCG
TATCCAAACACAATAGCCGTTTTTGGCAATGGACTTGATATCATATATCCAGCTTCAAATGCTAAAATAATTAGCCAAAT
TTATCAAAACTCACTAGCACTTAGCGAGTATGAGCCAGATACGCCAGCGATGGGCTTTAGGTTTTTAGAGCGAAACCGCA
TAGTCGTGGGGTTATCTCAAGCTTTAGTTGTAGCGCAAGCTGATTTTAGAAGCGGCTCGCTTCAAAGCGCAAGACTAGCA
CGCGAAATGGGCGTGCCGGTATATGTTTTGCCTCAACGCATAAATGAGAGCATGGGGACGAACGAGCTTTTGGGTAAAAA
TTTGGCAAATTTAATATACGATGTTGATGAATTTGCAAAGAATTTTAGCCAAATCGACCAAGCGAGCCAGATAAATGAAG
ATAATGAAGTGGTAAAATTTATCAAAGAAAATGATAGCTTTGATGAAGTTTATGCTAATTTTGGCGATTTAATTTACGAA
TATGAACTTGATGGTAAGGTAGAAATTCTAGGCACGAAGGTCGTGATAAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A128EDZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.71

89.883

0.51
  dprA Helicobacter pylori 26695

44.715

95.72

0.428