Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   STMM1_RS03780 Genome accession   NZ_CP065484
Coordinates   703532..704179 (-) Length   215 a.a.
NCBI ID   WP_014608171.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 698532..709179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM1_RS03765 (STMM1_03725) holA 700281..701315 (+) 1035 WP_014608169.1 DNA polymerase III subunit delta -
  STMM1_RS03770 (STMM1_03730) sodA 701410..702015 (+) 606 WP_071417552.1 superoxide dismutase SodA -
  STMM1_RS03775 (STMM1_03735) - 702112..703491 (+) 1380 WP_024704064.1 serine hydrolase -
  STMM1_RS03780 (STMM1_03740) cclA/cilC 703532..704179 (-) 648 WP_014608171.1 A24 family peptidase Machinery gene
  STMM1_RS03785 (STMM1_03745) - 704288..704809 (+) 522 WP_011680999.1 Dps family protein -
  STMM1_RS03790 (STMM1_03750) - 704824..705384 (+) 561 Protein_686 serine hydrolase -
  STMM1_RS03795 (STMM1_03755) cclA/cilC 705425..706072 (-) 648 WP_014608171.1 A24 family peptidase Machinery gene
  STMM1_RS03800 (STMM1_03760) - 706181..706702 (+) 522 WP_014608172.1 Dps family protein -
  STMM1_RS03805 (STMM1_03765) - 706791..707228 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  STMM1_RS03810 (STMM1_03770) - 707339..707545 (+) 207 WP_002950395.1 YqgQ family protein -
  STMM1_RS03815 (STMM1_03775) - 707538..708506 (+) 969 WP_011225772.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.98 Da        Isoelectric Point: 8.5469

>NTDB_id=448102 STMM1_RS03780 WP_014608171.1 703532..704179(-) (cclA/cilC) [Streptococcus thermophilus strain MM1]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFISVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=448102 STMM1_RS03780 WP_014608171.1 703532..704179(-) (cclA/cilC) [Streptococcus thermophilus strain MM1]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCATTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATTAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386