Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CGEO_RS03465 Genome accession   NZ_CP053844
Coordinates   748734..749117 (-) Length   127 a.a.
NCBI ID   WP_075493391.1    Uniprot ID   A0A128EGA0
Organism   Campylobacter geochelonis strain LMG 29375     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 743734..754117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGEO_RS03460 (CGEO_0689) - 747926..748243 (+) 318 WP_172658067.1 hypothetical protein -
  CGEO_RS03465 (CGEO_0690) dprB 748734..749117 (-) 384 WP_075493391.1 Holliday junction resolvase RuvX Machinery gene
  CGEO_RS03470 (CGEO_0691) dprA 749155..749928 (-) 774 WP_075540101.1 DNA-processing protein DprA Machinery gene
  CGEO_RS03475 (CGEO_0692) - 749912..750988 (-) 1077 WP_075540102.1 divergent polysaccharide deacetylase family protein -
  CGEO_RS03480 (CGEO_0693) ilvC 751003..752025 (-) 1023 WP_075493388.1 ketol-acid reductoisomerase -
  CGEO_RS03485 (CGEO_0694) - 752126..754054 (+) 1929 WP_075540103.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13591.78 Da        Isoelectric Point: 7.1661

>NTDB_id=448102 CGEO_RS03465 WP_075493391.1 748734..749117(-) (dprB) [Campylobacter geochelonis strain LMG 29375]
MIVAIDIGLKRIGVAIGYENGVVMPQNAILRKNRNQAATAVDAVLSEFGANKLVVGVPLGGSSEGEMRRRVEHFVGLLEF
GGEVCYIDESFSSVEAGEFGVANHKKKDGKLDSLAAMVILKRYLGVL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=448102 CGEO_RS03465 WP_075493391.1 748734..749117(-) (dprB) [Campylobacter geochelonis strain LMG 29375]
ATGATAGTGGCTATCGATATAGGACTTAAGCGCATAGGCGTTGCTATCGGTTATGAAAACGGCGTTGTAATGCCACAAAA
TGCAATCTTACGTAAAAATCGCAACCAAGCAGCGACTGCTGTGGACGCTGTTTTAAGCGAATTTGGCGCTAACAAGCTAG
TTGTTGGCGTGCCACTTGGTGGAAGTAGCGAGGGCGAGATGAGACGACGCGTGGAGCATTTTGTAGGGCTTCTTGAGTTT
GGTGGCGAAGTTTGCTATATAGATGAGAGCTTTTCTAGTGTTGAAGCTGGCGAGTTTGGCGTGGCAAATCACAAGAAAAA
AGATGGCAAGCTTGATAGTTTGGCTGCTATGGTGATTTTAAAAAGATATCTTGGGGTTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A128EGA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

47.287

100

0.48