Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CBLAS_RS03265 Genome accession   NZ_CP053841
Coordinates   633801..634568 (+) Length   255 a.a.
NCBI ID   WP_106870622.1    Uniprot ID   -
Organism   Campylobacter blaseri strain LMG 30333     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 628801..639568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBLAS_RS03250 (CBLAS_0640) - 629646..631574 (-) 1929 WP_106870097.1 ribonuclease R family protein -
  CBLAS_RS03255 (CBLAS_0641) ilvC 631704..632726 (+) 1023 WP_106870099.1 ketol-acid reductoisomerase -
  CBLAS_RS03260 (CBLAS_0642) - 632729..633817 (+) 1089 WP_106870101.1 divergent polysaccharide deacetylase family protein -
  CBLAS_RS03265 (CBLAS_0643) dprA 633801..634568 (+) 768 WP_106870622.1 DNA-processing protein DprA Machinery gene
  CBLAS_RS03270 (CBLAS_0644) dprB 634565..634960 (+) 396 WP_106870106.1 Holliday junction resolvase RuvX Machinery gene
  CBLAS_RS03275 (CBLAS_0645) - 635154..636098 (-) 945 WP_106870109.1 hypothetical protein -
  CBLAS_RS03280 (CBLAS_0646) queA 636337..637356 (-) 1020 WP_106870111.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CBLAS_RS03285 (CBLAS_0647) tatC 637349..638095 (-) 747 WP_106870114.1 twin-arginine translocase subunit TatC -
  CBLAS_RS03290 (CBLAS_0648) tatB 638095..638514 (-) 420 WP_106870116.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28435.85 Da        Isoelectric Point: 9.1330

>NTDB_id=448076 CBLAS_RS03265 WP_106870622.1 633801..634568(+) (dprA) [Campylobacter blaseri strain LMG 30333]
MNTIDNIDALNKLQNPPKKLFFKGNLEFLNMLKVSIVGSRKMSFYTKSLVLQLSSALSKRGVCVVSGGALGVDITAHKGA
FPNTIAVFANGLDIIYPKTNEKNIKEIYENSLALSEYEPKTRPLRHHFLQRNRIVVALSEALVVAQAELRSGSLQSARLA
MELGIPVYVLPHQINESIGTNELLATKKANLIYNIDKFADKFGNLSHIENDNDEVIEFIKTNSSFNDAHLKFGDLVYEYE
LQGKIEILGSRIVIK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=448076 CBLAS_RS03265 WP_106870622.1 633801..634568(+) (dprA) [Campylobacter blaseri strain LMG 30333]
ATGAATACTATAGATAACATAGATGCATTAAATAAGCTTCAAAATCCACCAAAAAAGCTTTTTTTTAAAGGAAATTTAGA
ATTTTTAAATATGCTAAAAGTTTCCATTGTTGGCTCAAGAAAAATGAGTTTTTATACTAAAAGTTTGGTTTTGCAACTAT
CAAGTGCTCTTAGTAAAAGAGGGGTTTGTGTTGTAAGTGGTGGTGCATTAGGGGTTGATATAACTGCACATAAAGGAGCA
TTTCCTAATACTATAGCAGTTTTTGCAAATGGATTAGATATCATTTATCCAAAAACAAATGAAAAAAACATTAAAGAAAT
TTATGAAAACTCACTTGCTTTAAGTGAGTACGAACCAAAAACCAGACCTTTAAGACACCATTTCTTACAAAGAAATAGAA
TAGTTGTAGCACTAAGTGAGGCTTTAGTTGTAGCACAAGCTGAGTTAAGAAGTGGATCTTTGCAAAGTGCTAGATTAGCT
ATGGAGCTAGGCATTCCTGTTTATGTTTTACCACATCAAATAAACGAAAGTATAGGAACAAACGAGTTATTAGCTACTAA
AAAAGCAAACTTAATCTATAATATAGATAAATTTGCTGATAAATTTGGTAATTTAAGTCATATTGAAAATGATAACGATG
AAGTGATTGAGTTTATAAAAACAAATAGTAGCTTTAATGATGCTCATCTTAAATTTGGAGATTTAGTTTATGAATATGAG
CTTCAAGGAAAGATAGAAATTTTAGGTTCAAGGATAGTTATAAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.702

89.412

0.498
  dprA Helicobacter pylori 26695

44.961

100

0.455