Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CBLAS_RS03270 Genome accession   NZ_CP053841
Coordinates   634565..634960 (+) Length   131 a.a.
NCBI ID   WP_106870106.1    Uniprot ID   A0A2P8R211
Organism   Campylobacter blaseri strain LMG 30333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 629565..639960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBLAS_RS03250 (CBLAS_0640) - 629646..631574 (-) 1929 WP_106870097.1 ribonuclease R family protein -
  CBLAS_RS03255 (CBLAS_0641) ilvC 631704..632726 (+) 1023 WP_106870099.1 ketol-acid reductoisomerase -
  CBLAS_RS03260 (CBLAS_0642) - 632729..633817 (+) 1089 WP_106870101.1 divergent polysaccharide deacetylase family protein -
  CBLAS_RS03265 (CBLAS_0643) dprA 633801..634568 (+) 768 WP_106870622.1 DNA-processing protein DprA Machinery gene
  CBLAS_RS03270 (CBLAS_0644) dprB 634565..634960 (+) 396 WP_106870106.1 Holliday junction resolvase RuvX Machinery gene
  CBLAS_RS03275 (CBLAS_0645) - 635154..636098 (-) 945 WP_106870109.1 hypothetical protein -
  CBLAS_RS03280 (CBLAS_0646) queA 636337..637356 (-) 1020 WP_106870111.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CBLAS_RS03285 (CBLAS_0647) tatC 637349..638095 (-) 747 WP_106870114.1 twin-arginine translocase subunit TatC -
  CBLAS_RS03290 (CBLAS_0648) tatB 638095..638514 (-) 420 WP_106870116.1 Sec-independent protein translocase protein TatB -
  CBLAS_RS03295 (CBLAS_0649) hemW 638561..639610 (-) 1050 WP_106870118.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14481.78 Da        Isoelectric Point: 10.0300

>NTDB_id=448077 CBLAS_RS03270 WP_106870106.1 634565..634960(+) (dprB) [Campylobacter blaseri strain LMG 30333]
MIAAIDVGLKRIGIALGYKNGVTVPINAVLRKNRNQAAFDVSSVLKEWSVARLVVGIPLGGSSEDEMRRRISHFVSLLDF
SGEIIYIDESFSSIEASEFGVANHKKKDGKLDSLSALVILQRYLEKQKFTK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=448077 CBLAS_RS03270 WP_106870106.1 634565..634960(+) (dprB) [Campylobacter blaseri strain LMG 30333]
ATGATAGCAGCCATTGATGTTGGGCTAAAAAGAATAGGTATAGCTTTGGGTTATAAAAATGGCGTAACCGTTCCTATAAA
TGCAGTTTTAAGAAAAAACAGAAATCAAGCAGCTTTTGATGTAAGTAGTGTTTTAAAAGAGTGGAGTGTTGCAAGGCTTG
TTGTTGGAATTCCACTTGGTGGAAGTAGCGAAGATGAGATGAGAAGACGAATTTCGCATTTTGTTTCATTGTTAGATTTT
AGTGGTGAGATAATATATATAGATGAGAGCTTTTCAAGTATTGAAGCAAGTGAGTTTGGTGTTGCAAATCATAAAAAAAA
AGATGGTAAACTTGATAGTTTATCAGCACTTGTTATACTTCAAAGGTATTTGGAAAAACAAAAATTTACTAAATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P8R211

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

52.273

100

0.527