Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CURT_RS04865 Genome accession   NZ_CP053832
Coordinates   957511..958299 (-) Length   262 a.a.
NCBI ID   WP_018713121.1    Uniprot ID   A0A381E7U6
Organism   Campylobacter ureolyticus strain LMG 6451     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 952511..963299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CURT_RS04845 (CURT_0941) queA 952949..953968 (+) 1020 WP_018713117.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CURT_RS04850 (CURT_0942) - 954682..956172 (+) 1491 WP_026320320.1 C69 family dipeptidase -
  CURT_RS04855 (CURT_0943) - 956496..956999 (-) 504 WP_018713119.1 hypothetical protein -
  CURT_RS04860 (CURT_0944) dprB 957100..957486 (-) 387 WP_018713120.1 Holliday junction resolvase RuvX Machinery gene
  CURT_RS04865 (CURT_0945) dprA 957511..958299 (-) 789 WP_018713121.1 DNA-processing protein DprA Machinery gene
  CURT_RS04870 (CURT_0946) - 958286..959461 (-) 1176 WP_018713122.1 divergent polysaccharide deacetylase family protein -
  CURT_RS04875 (CURT_0947) ilvC 959477..960499 (-) 1023 WP_018713123.1 ketol-acid reductoisomerase -
  CURT_RS04880 (CURT_0948) - 960591..962519 (+) 1929 WP_018713124.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29017.59 Da        Isoelectric Point: 9.3816

>NTDB_id=448013 CURT_RS04865 WP_018713121.1 957511..958299(-) (dprA) [Campylobacter ureolyticus strain LMG 6451]
MKGINELLIGSLDELKCLKKVKNPPNKLFYKGDLSLLKKRKIAIVGSRKMTIYTKNLILNLSSKLKNIDFCVVSGCALGC
DAAAHKGAFPNTIAVFGNGLNQIYPKTNEALINQIYNSSLALSEYEPNTPAKGYQFLERNRIVVGLSEALIVAQADLRSG
SLQSARLANEMGIPVFVFPHRINESRGTNELLAKNKANLIDDIDKFVAKFGGEISKNSDDELINFVKSNSNFDEIYAKFG
DKIYEYEFDGKIEILGTKVLVK

Nucleotide


Download         Length: 789 bp        

>NTDB_id=448013 CURT_RS04865 WP_018713121.1 957511..958299(-) (dprA) [Campylobacter ureolyticus strain LMG 6451]
ATGAAAGGTATTAATGAGTTGTTAATTGGTTCATTGGATGAACTAAAATGCCTAAAAAAAGTAAAAAATCCACCTAATAA
GCTTTTTTATAAAGGAGATTTATCGCTTTTAAAAAAACGAAAAATTGCAATTGTTGGATCTAGAAAAATGACAATTTACA
CTAAAAATTTAATTTTAAACCTCTCTTCAAAACTTAAAAATATTGATTTTTGTGTAGTAAGTGGATGTGCCTTGGGATGC
GACGCGGCCGCTCACAAAGGAGCTTTTCCAAACACAATAGCTGTTTTTGGAAACGGTCTAAATCAAATTTATCCAAAAAC
AAATGAAGCTTTAATAAACCAAATTTATAACTCCTCACTTGCATTGAGCGAGTATGAGCCAAATACACCAGCAAAAGGAT
ATCAATTTTTAGAAAGAAACCGCATAGTTGTGGGACTTAGCGAGGCTTTGATAGTTGCTCAAGCTGATTTAAGAAGTGGT
TCACTTCAAAGTGCAAGACTTGCAAATGAGATGGGAATTCCCGTGTTTGTTTTTCCACACCGCATAAATGAAAGTAGAGG
AACAAATGAACTTTTAGCAAAAAATAAAGCAAATTTAATAGATGATATTGATAAATTTGTTGCAAAATTTGGCGGTGAGA
TTTCAAAAAATAGCGATGATGAGCTTATAAATTTTGTAAAGTCAAACTCAAATTTTGATGAAATTTACGCTAAATTTGGC
GATAAAATTTACGAATATGAGTTTGATGGAAAGATTGAAATTTTAGGCACAAAAGTGCTTGTAAAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(17-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A381E7U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.31

88.55

0.481
  dprA Helicobacter pylori 26695

42.623

93.13

0.397