Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CURT_RS04860 Genome accession   NZ_CP053832
Coordinates   957100..957486 (-) Length   128 a.a.
NCBI ID   WP_018713120.1    Uniprot ID   -
Organism   Campylobacter ureolyticus strain LMG 6451     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952100..962486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CURT_RS04840 (CURT_0940) tatC 952219..952956 (+) 738 WP_018713116.1 twin-arginine translocase subunit TatC -
  CURT_RS04845 (CURT_0941) queA 952949..953968 (+) 1020 WP_018713117.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CURT_RS04850 (CURT_0942) - 954682..956172 (+) 1491 WP_026320320.1 C69 family dipeptidase -
  CURT_RS04855 (CURT_0943) - 956496..956999 (-) 504 WP_018713119.1 hypothetical protein -
  CURT_RS04860 (CURT_0944) dprB 957100..957486 (-) 387 WP_018713120.1 Holliday junction resolvase RuvX Machinery gene
  CURT_RS04865 (CURT_0945) dprA 957511..958299 (-) 789 WP_018713121.1 DNA-processing protein DprA Machinery gene
  CURT_RS04870 (CURT_0946) - 958286..959461 (-) 1176 WP_018713122.1 divergent polysaccharide deacetylase family protein -
  CURT_RS04875 (CURT_0947) ilvC 959477..960499 (-) 1023 WP_018713123.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14388.69 Da        Isoelectric Point: 8.9661

>NTDB_id=448012 CURT_RS04860 WP_018713120.1 957100..957486(-) (dprB) [Campylobacter ureolyticus strain LMG 6451]
MIACIDVGLKRIGIALGYKNGVIVPINAILRKNRNQAAKDVKHILDEWSVKKLVVGIPLGGSSEDEMRRRINHFVNLLDF
NGEIVFFDESFSSVEAEEFGVANHKKKDGKLDSLSAMVILQRYFDSLR

Nucleotide


Download         Length: 387 bp        

>NTDB_id=448012 CURT_RS04860 WP_018713120.1 957100..957486(-) (dprB) [Campylobacter ureolyticus strain LMG 6451]
ATGATTGCTTGTATAGATGTCGGACTTAAAAGAATTGGCATTGCTCTTGGATATAAAAATGGTGTTATAGTCCCCATAAA
TGCAATTTTAAGAAAAAACAGAAACCAAGCAGCAAAAGATGTAAAACATATACTTGATGAATGGAGTGTAAAAAAGCTCG
TTGTTGGTATCCCGCTTGGTGGAAGTAGCGAAGATGAGATGAGAAGACGAATTAATCATTTTGTAAATTTGCTTGATTTT
AATGGTGAAATTGTGTTTTTTGATGAGAGCTTTTCAAGCGTTGAAGCAGAGGAGTTTGGTGTGGCAAATCATAAGAAAAA
AGATGGTAAGCTTGATAGTCTTTCAGCAATGGTGATTTTACAAAGATATTTTGATAGTTTAAGATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

52.713

100

0.531