Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY09_RS11990 Genome accession   NZ_CP053813
Coordinates   2657472..2658116 (+) Length   214 a.a.
NCBI ID   WP_175247026.1    Uniprot ID   -
Organism   Vibrio cholerae strain W7G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2652472..2663116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY09_RS11975 (HPY09_12035) - 2653059..2654498 (-) 1440 WP_057563366.1 PilN domain-containing protein -
  HPY09_RS11980 (HPY09_12040) csrD 2654511..2656523 (-) 2013 WP_001926798.1 RNase E specificity factor CsrD -
  HPY09_RS11985 (HPY09_12045) ssb 2656647..2657180 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY09_RS11990 (HPY09_12050) qstR 2657472..2658116 (+) 645 WP_175247026.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY09_RS11995 (HPY09_12055) galU 2658289..2659161 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY09_RS12000 (HPY09_12060) uvrA 2659317..2662139 (+) 2823 WP_071179834.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24721.57 Da        Isoelectric Point: 9.8040

>NTDB_id=447764 HPY09_RS11990 WP_175247026.1 2657472..2658116(+) (qstR) [Vibrio cholerae strain W7G]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANENTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447764 HPY09_RS11990 WP_175247026.1 2657472..2658116(+) (qstR) [Vibrio cholerae strain W7G]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAAACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCGCGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.131

100

0.981
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519