Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY07_RS11850 Genome accession   NZ_CP053806
Coordinates   2629311..2629955 (+) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain SP6G     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2624311..2634955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS11835 (HPY07_11845) - 2624898..2626337 (-) 1440 WP_095461817.1 PilN domain-containing protein -
  HPY07_RS11840 (HPY07_11850) csrD 2626350..2628362 (-) 2013 WP_042988586.1 RNase E specificity factor CsrD -
  HPY07_RS11845 (HPY07_11855) ssb 2628486..2629019 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY07_RS11850 (HPY07_11860) qstR 2629311..2629955 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY07_RS11855 (HPY07_11865) galU 2630128..2631000 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY07_RS11860 (HPY07_11870) uvrA 2631156..2633978 (+) 2823 WP_175242145.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=447622 HPY07_RS11850 WP_001188318.1 2629311..2629955(+) (qstR) [Vibrio cholerae strain SP6G]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447622 HPY07_RS11850 WP_001188318.1 2629311..2629955(+) (qstR) [Vibrio cholerae strain SP6G]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519