Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HPY06_RS11675 Genome accession   NZ_CP053804
Coordinates   2586789..2587433 (+) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain SL6Y     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2581789..2592433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS11660 (HPY06_11665) - 2582376..2583815 (-) 1440 WP_000743258.1 PilN domain-containing protein -
  HPY06_RS11665 (HPY06_11670) csrD 2583828..2585840 (-) 2013 WP_069216271.1 RNase E specificity factor CsrD -
  HPY06_RS11670 (HPY06_11675) ssb 2585964..2586497 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  HPY06_RS11675 (HPY06_11680) qstR 2586789..2587433 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  HPY06_RS11680 (HPY06_11685) galU 2587606..2588478 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HPY06_RS11685 (HPY06_11690) uvrA 2588634..2591456 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=447574 HPY06_RS11675 WP_001188318.1 2586789..2587433(+) (qstR) [Vibrio cholerae strain SL6Y]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=447574 HPY06_RS11675 WP_001188318.1 2586789..2587433(+) (qstR) [Vibrio cholerae strain SL6Y]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCTGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTAAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519