Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GE022_RS06865 Genome accession   NZ_CP053790
Coordinates   1417494..1418303 (-) Length   269 a.a.
NCBI ID   WP_141290703.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412494..1423303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS06855 (GE022_006845) smc 1413154..1416699 (-) 3546 WP_164405233.1 chromosome segregation protein SMC -
  GE022_RS06860 (GE022_006850) rnc 1416700..1417392 (-) 693 WP_093998381.1 ribonuclease III -
  GE022_RS06865 (GE022_006855) vicX 1417494..1418303 (-) 810 WP_141290703.1 MBL fold metallo-hydrolase Regulator
  GE022_RS06870 (GE022_006860) vicK 1418307..1419659 (-) 1353 WP_125074099.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GE022_RS06875 (GE022_006865) vicR 1419652..1420362 (-) 711 WP_164405232.1 response regulator YycF Regulator
  GE022_RS06880 (GE022_006870) - 1420541..1421536 (-) 996 WP_164405231.1 DUF3114 domain-containing protein -
  GE022_RS10840 - 1422151..1422282 (-) 132 WP_263399211.1 hypothetical protein -
  GE022_RS06890 (GE022_006880) - 1422411..1423121 (-) 711 WP_244951826.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30067.29 Da        Isoelectric Point: 6.2239

>NTDB_id=447219 GE022_RS06865 WP_141290703.1 1417494..1418303(-) (vicX) [Streptococcus canis strain HL_77_2]
MIASGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLGVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=447219 GE022_RS06865 WP_141290703.1 1417494..1418303(-) (vicX) [Streptococcus canis strain HL_77_2]
ATGATTGCAAGCGGTTTTAAATATAGTATTTTGGCATCTGGCTCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGCTTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGAGTGGGGGTCATGGCTCGTAAATACCATTTGGAC
GTTTATGCCAATGAAAAAACGTGGCAGTTGATGGATGAGCGCAATATGCTAGGAAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGGGTTAGCCATGATGCTGTTGATCCCC
AGTTTTACCGTATCATGAAAGACAACAAATCGTTTGTAATGCTGACTGATACAGGTTATGTTAGCGATCGAATGACAGGT
ATTATTGAAAATGCAGATGGTTACTTGATTGAGTCCAATCATGACATTGAAATTTTAAGATCAGGCTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGATCTGGGCCATTTGTCAAATGAAGATGGTGCTGGGGCCATGATTAGAAGTTTGGGGC
ATAAGACGAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGCTGGCTCACATGACCATGGTTAAC
CAATTAGCCATGGCAGACTTGGGAGTTGGAACAGATTTTACGGTTCATGACACTTCCCCAGATACGGCCTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758