Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I5593_RS15960 Genome accession   NZ_CP065432
Coordinates   3316672..3317082 (-) Length   136 a.a.
NCBI ID   WP_001200144.1    Uniprot ID   A0ABX6CC12
Organism   Acinetobacter baumannii strain ATCC 17961     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3311672..3322082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5593_RS15930 (I5593_15930) - 3311758..3312027 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  I5593_RS15935 (I5593_15935) rapZ 3312024..3312875 (-) 852 WP_000821671.1 RNase adapter RapZ -
  I5593_RS15940 (I5593_15940) panC 3312898..3313746 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  I5593_RS15945 (I5593_15945) panB 3313750..3314559 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I5593_RS15950 (I5593_15950) folK 3314605..3315087 (-) 483 WP_000219224.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I5593_RS15955 (I5593_15955) pcnB 3315084..3316547 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  I5593_RS15960 (I5593_15960) comEA 3316672..3317082 (-) 411 WP_001200144.1 ComEA family DNA-binding protein Machinery gene
  I5593_RS15965 (I5593_15965) mazG 3317051..3317857 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  I5593_RS15970 (I5593_15970) - 3317969..3318742 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  I5593_RS15975 (I5593_15975) - 3318787..3321093 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15747.09 Da        Isoelectric Point: 10.4475

>NTDB_id=447212 I5593_RS15960 WP_001200144.1 3316672..3317082(-) (comEA) [Acinetobacter baumannii strain ATCC 17961]
MQYSMRFWKNKYFILIMLCLGVVSPSVYAQSFDQNFQEWKAKQQMYDQKLKITKSSHSNGSKISQTKNFNDFTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=447212 I5593_RS15960 WP_001200144.1 3316672..3317082(-) (comEA) [Acinetobacter baumannii strain ATCC 17961]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTATTTTAATAATGTTGTGCTTGGGAGTAGTTTCACCTTCAGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAAGATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTTTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

93.382

100

0.934
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404