Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   GE022_RS00880 Genome accession   NZ_CP053790
Coordinates   144836..145789 (+) Length   317 a.a.
NCBI ID   WP_164405635.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139836..150789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS00840 (GE022_000840) - 140662..141027 (+) 366 WP_125073632.1 DUF1033 family protein -
  GE022_RS00845 (GE022_000845) comYA 141114..142055 (+) 942 WP_003046182.1 competence type IV pilus ATPase ComGA Machinery gene
  GE022_RS00850 (GE022_000850) comYB 141988..143022 (+) 1035 WP_172758339.1 competence type IV pilus assembly protein ComGB Machinery gene
  GE022_RS00855 (GE022_000855) comYC 143025..143351 (+) 327 WP_164405637.1 competence type IV pilus major pilin ComGC Machinery gene
  GE022_RS00860 (GE022_000860) comGD 143326..143754 (+) 429 WP_276509017.1 competence type IV pilus minor pilin ComGD -
  GE022_RS00865 (GE022_000865) comGE 143762..144007 (+) 246 WP_051026419.1 competence type IV pilus minor pilin ComGE -
  GE022_RS00870 (GE022_000870) comGF 143988..144428 (+) 441 WP_003046192.1 competence type IV pilus minor pilin ComGF -
  GE022_RS00875 (GE022_000875) comGG 144406..144786 (+) 381 WP_003046193.1 competence type IV pilus minor pilin ComGG -
  GE022_RS00880 (GE022_000880) comYH 144836..145789 (+) 954 WP_164405635.1 class I SAM-dependent methyltransferase Machinery gene
  GE022_RS00885 (GE022_000885) - 145848..147044 (+) 1197 WP_093998734.1 acetate kinase -
  GE022_RS00890 (GE022_000890) - 147336..147542 (+) 207 WP_164405634.1 helix-turn-helix transcriptional regulator -
  GE022_RS00895 (GE022_000895) - 147543..147683 (+) 141 Protein_131 type II CAAX prenyl endopeptidase Rce1 family protein -
  GE022_RS10595 - 147701..148138 (+) 438 WP_164228326.1 hypothetical protein -
  GE022_RS00905 (GE022_000905) proC 148278..149054 (-) 777 WP_164405633.1 pyrroline-5-carboxylate reductase -
  GE022_RS00910 (GE022_000910) pepA 149102..150169 (-) 1068 WP_164228328.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35993.07 Da        Isoelectric Point: 4.9560

>NTDB_id=447196 GE022_RS00880 WP_164405635.1 144836..145789(+) (comYH) [Streptococcus canis strain HL_77_2]
MNFEKIEEAYQLLLENSQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNIDKLKALCLTKEEWRRAYQFIFIKAAQT
EQLQANHQFTPDTIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLSASIAEVMNSS
ARFIQEDAVRPQLLKESDIVISDLPVGYYPNDAIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSPQ
SQLLKHWLKGYAQVVALITLPDTIFGHPSNAKSIIVLQKQTNRPSETFVYPIRDLKLAENIHDFMQNFKKWKLDNVN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=447196 GE022_RS00880 WP_164405635.1 144836..145789(+) (comYH) [Streptococcus canis strain HL_77_2]
ATGAATTTTGAAAAAATTGAAGAAGCTTATCAGTTGCTTTTAGAGAATAGCCAACTGATTGAAAATGACTTAAAAACCCA
TATTTATGATGCCATTGTTGAACAAAACTCCTTTTATTTAGGGGCAGAGGGAGCTAGTCCTCAGGTGGCTCAAAACATTG
ATAAACTGAAAGCCTTGTGCCTGACAAAAGAAGAATGGCGCAGAGCCTACCAGTTTATTTTTATTAAGGCAGCTCAGACT
GAACAACTGCAAGCCAACCATCAGTTCACACCAGATACTATTGGTTTTATTCTTCTCTATCTGTTGGAACAATTGAGCGA
TAAAGATAGCTTAGAGGTGCTTGAAATTGGGAGTGGAACAGGGAACCTAGCTCAAACCCTTCTCAACAACACGAGCAAGT
CTCTTGATTATGTAGGAATTGAACTTGATGATCTCTTGATTGATTTGTCAGCCAGCATTGCAGAGGTGATGAATTCTTCA
GCTCGTTTTATTCAAGAAGATGCGGTAAGGCCTCAATTACTAAAAGAAAGTGACATTGTCATCAGTGACTTACCAGTTGG
CTATTATCCTAACGATGCTATTGCCAAACGTTACAAGGTGGCTAGTTCAGATGAGCATACTTATGCCCATCATTTATTAA
TGGAACAGTCTTTAAAATACTTGAAAAAAGACGGTTTTGCGATTTTTCTGGCACCAGTCAATTTATTGACGAGCCCTCAG
AGCCAGTTATTGAAACATTGGTTAAAAGGATATGCTCAGGTGGTGGCTCTAATTACTCTACCAGACACCATTTTTGGTCA
TCCATCCAATGCCAAGTCTATTATTGTCTTGCAAAAGCAGACAAATCGTCCATCGGAAACCTTTGTTTACCCTATTCGAG
ATTTGAAACTTGCAGAGAATATTCATGACTTTATGCAAAATTTCAAAAAATGGAAACTGGATAATGTCAATTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

66.456

99.685

0.662
  comYH Streptococcus mutans UA140

66.139

99.685

0.659