Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   GE023_RS07270 Genome accession   NZ_CP053789
Coordinates   1474397..1475404 (-) Length   335 a.a.
NCBI ID   WP_003047152.1    Uniprot ID   A0AAV3FQM1
Organism   Streptococcus canis strain HL_98_2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1469397..1480404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS07255 (GE023_007250) - 1470368..1471702 (-) 1335 WP_159305767.1 glycosyltransferase family 4 protein -
  GE023_RS07260 (GE023_007255) - 1471704..1472702 (-) 999 WP_159305768.1 glycosyltransferase family 4 protein -
  GE023_RS07265 (GE023_007260) - 1472780..1474243 (-) 1464 WP_159305769.1 alpha-amylase -
  GE023_RS07270 (GE023_007265) ccpA 1474397..1475404 (-) 1008 WP_003047152.1 catabolite control protein A Regulator
  GE023_RS07275 (GE023_007270) - 1475578..1476663 (+) 1086 WP_159304634.1 Xaa-Pro peptidase family protein -
  GE023_RS07280 (GE023_007275) - 1476712..1477377 (+) 666 WP_003047146.1 NAD(P)H-dependent oxidoreductase -
  GE023_RS07285 (GE023_007280) - 1477387..1477764 (+) 378 WP_003047144.1 VOC family protein -
  GE023_RS07290 (GE023_007285) - 1478052..1478978 (+) 927 WP_159304633.1 glycosyltransferase family 2 protein -
  GE023_RS07295 (GE023_007290) - 1479110..1479550 (-) 441 WP_159305770.1 cell division protein FtsW -
  GE023_RS07300 (GE023_007295) smpB 1479710..1480177 (-) 468 WP_159305771.1 SsrA-binding protein SmpB -

Sequence


Protein


Download         Length: 335 a.a.        Molecular weight: 36890.99 Da        Isoelectric Point: 5.4980

>NTDB_id=447168 GE023_RS07270 WP_003047152.1 1474397..1475404(-) (ccpA) [Streptococcus canis strain HL_98_2]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLDHQLPS
VNIDYKAAVSNVVDILAENHMSIAFVSGPLIDDINGKVRLAGYKEGLKQNKLDFKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPVVQYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKKRGTTRQG

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=447168 GE023_RS07270 WP_003047152.1 1474397..1475404(-) (ccpA) [Streptococcus canis strain HL_98_2]
ATGAATACAGATGATACCATCACGATTTACGATGTTGCCCGTGAAGCTGGTGTTTCAATGGCAACCGTTAGTCGTGTTGT
TAATGGCAACAAAAACGTTAAGGAAAACACACGTAAGAAAGTTTTAGAAGTCATTGACCGCTTAGATTATCGTCCAAATG
CTGTCGCGCGTGGACTTGCCAGCAAAAAAACAACAACAGTTGGTGTTGTGATTCCTAATATTGCAAACAGTTACTTTTCT
ATCTTAGCCAAAGGTATTGATGATATTGCCGCTATGTATAAATATAATATTGTGCTTGCCTCCAGTGATGAGGATGATGA
CAAGGAGGTTAACGTTGTTAACACTCTCTTTGCTAAGCAGGTGGACGGTATTATTTTTATGGGGCATCACTTGACTGAAA
AGATTCGTGCGGAATTCTCACGTTCACGGACACCGATTGTTTTGGCAGGAACCGTAGACCTCGATCATCAACTACCAAGT
GTTAATATTGACTATAAAGCAGCTGTCTCAAATGTGGTTGATATTTTAGCGGAAAACCATATGAGCATTGCTTTTGTATC
TGGTCCTCTCATTGATGACATCAATGGCAAGGTACGCTTAGCGGGCTACAAAGAAGGTTTGAAGCAAAACAAACTAGATT
TCAAAGAAGGGCTTGTTTTTGAAGCAAATTACTCTTATAAGGAAGGCTTTGAACTAGCGCAACGCGTGATTAATTCAGGG
GCAACAGCAGCTTATGTTGCTGAGGATGAATTGGCAGCAGGCCTTTTAAATGGCTTATTTGAAGCAGGTAAACGTGTGCC
AGAAGACTTTGAAATCATCACAAGCAACGATTCGCCAGTGGTTCAATACACTCGTCCAAACTTGAGTTCTATCAGTCAAC
CCGTTTACGATTTGGGAGCTGTCAGCATGCGCATGTTGACTAAAATCATGAACAAAGAAGAATTGGAAGAAAAAGAAATT
CTCTTGAACCACGGCATCAAAAAACGTGGTACAACCAGACAAGGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.844

99.701

0.776

  ccpA Streptococcus pneumoniae D39

76.048

99.701

0.758

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.287

98.806

0.546